Strain identifier
BacDive ID: 7309
Type strain: 
Species: Curtobacterium flaccumfaciens
Strain history: <- ATCC <- NCTC <- W.J. Dowson
NCBI tax ID(s): 2035 (species)
version 8.1 (current version)
General
@ref: 8554
BacDive-ID: 7309
DSM-Number: 20129
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive, plant pathogen
description: Curtobacterium flaccumfaciens DSM 20129 is a mesophilic, Gram-positive plant pathogen that was isolated from bean blight.
NCBI tax id
- NCBI tax id: 2035
- Matching level: species
strain history
- @ref: 8554
- history: <- ATCC <- NCTC <- W.J. Dowson
doi: 10.13145/bacdive7309.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Curtobacterium
- species: Curtobacterium flaccumfaciens
- full scientific name: Curtobacterium flaccumfaciens (Hedges 1922) Collins and Jones 1984
synonyms
@ref synonym 20215 Corynebacterium flaccumfaciens 20215 Bacterium flaccumfaciens 20215 Phytomonas poinsettiae 20215 Corynebacterium betae 20215 Corynebacterium poinsettiae 20215 Corynebacterium flaccumfaciens subsp. poinsettiae 20215 Corynebacterium oortii 20215 Corynebacterium flaccumfaciens subsp. oortii 20215 Corynebacterium flaccumfaciens subsp. betae
@ref: 8554
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Curtobacterium
species: Curtobacterium flaccumfaciens
full scientific name: Curtobacterium flaccumfaciens (Hedges 1922) Collins and Jones 1984
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 8554
- name: CORYNEBACTERIUM AGAR (DSMZ Medium 53)
- growth: yes
- link: https://mediadive.dsmz.de/medium/53
- composition: Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 8554
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.999
murein
- @ref: 8554
- murein short key: B05
- type: B2ß {Gly} [L-Hsr] D-Glu-D-Orn
Isolation, sampling and environmental information
isolation
- @ref: 8554
- sample type: bean blight
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Microbial | #Bacteria |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_614.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_387;97_436;98_498;99_614&stattab=map
- Last taxonomy: Curtobacterium
- 16S sequence: AM410688
- Sequence Identity:
- Total samples: 48823
- soil counts: 11124
- aquatic counts: 6793
- animal counts: 21247
- plant counts: 9659
Safety information
risk assessment
- @ref: 8554
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Curtobacterium flaccumfaciens pv. flaccumfaciens partial 16S rRNA gene, type strain DSM 20129
- accession: AM410688
- length: 1514
- database: ena
- NCBI tax ID: 138532
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Curtobacterium flaccumfaciens pv. flaccumfaciens DSM 20129 | GCA_019448195 | complete | ncbi | 138532 |
| 66792 | Curtobacterium flaccumfaciens pv. flaccumfaciens strain DSM 20129 | 138532.41 | complete | patric | 138532 |
GC content
- @ref: 8554
- GC-content: 68.3
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 65 | no |
| flagellated | no | 93.417 | no |
| gram-positive | yes | 91.783 | no |
| anaerobic | no | 99.49 | no |
| aerobic | yes | 90.652 | no |
| halophile | no | 86.619 | no |
| spore-forming | no | 91.32 | no |
| motile | no | 50 | no |
| thermophile | no | 99.496 | yes |
| glucose-util | yes | 86.198 | no |
| glucose-ferment | no | 85.354 | no |
External links
@ref: 8554
culture collection no.: DSM 20129, ATCC 6887, NCTC 4758
straininfo link
- @ref: 76759
- straininfo: 265237
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 6183393 | Nucleic acid hybridization studies on Microbacterium, Curtobacterium, Agromyces and related taxa. | Dopfer H, Stackebrandt E, Fiedler F | J Gen Microbiol | 10.1099/00221287-128-8-1697 | 1982 | Actinomycetales/*classification/metabolism, DNA, Bacterial, *Nucleic Acid Hybridization, RNA, Bacterial, RNA, Ribosomal | Metabolism |
| Metabolism | 10830490 | Development of an improved assay for purine nucleoside kinase activity in cell extracts and detection of inosine kinase activity in Brevibacterium acetylicum ATCC 953, related species, and Corynebacterium flaccumfaciens ATCC 6887. | Kawasaki H, Usuda Y, Shimaoka M, Utagawa T | Biosci Biotechnol Biochem | 10.1271/bbb.64.761 | 2000 | Adenosine Triphosphate/metabolism, Brevibacterium/*enzymology, Corynebacterium/*enzymology, Magnesium, Pentosyltransferases/*metabolism, Phosphorylation, Phosphotransferases/*metabolism, Phosphotransferases (Alcohol Group Acceptor)/*metabolism | Enzymology |
| 36281013 | First Report of Curtobacterium flaccumfaciens pv. flaccumfaciens Causing Bacterial Wilt and Blight on Sunflower in Russia. | Pilik RI, Tesic S, Ignatov AN, Tarakanov RI, Dorofeeva LV, Lukianova AA, Evseev PV, Dzhalilov FS, Miroshnikov KA | Plant Dis | 10.1094/PDIS-05-22-1203-PDN | 2022 | |||
| 36471471 | First report of Curtobacterium flaccumfaciens pv. flaccumfaciens causing bacterial tan spot of soybean in Russia. | Tarakanov RI, Lukianova AA, Pilik RI, Evseev PV, Miroshnikov KA, Dzhalilov FS, Tesic S, Ignatov AN | Plant Dis | 10.1094/PDIS-08-22-1778-PDN | 2022 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 8554 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20129) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20129 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 76759 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID265237.1 | StrainInfo: A central database for resolving microbial strain identifiers |