Strain identifier
BacDive ID: 7288
Type strain: 
Species: Clavibacter michiganensis
Strain history: <- IMET <- CCM <- R. de Vicente Jordana
NCBI tax ID(s): 28447 (species)
version 8.1 (current version)
General
@ref: 12509
BacDive-ID: 7288
DSM-Number: 46294
keywords: Bacteria, mesophilic, plant pathogen
description: Clavibacter michiganensis DSM 46294 is a mesophilic plant pathogen of the family Microbacteriaceae.
NCBI tax id
- NCBI tax id: 28447
- Matching level: species
strain history
- @ref: 12509
- history: <- IMET <- CCM <- R. de Vicente Jordana
doi: 10.13145/bacdive7288.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Clavibacter
- species: Clavibacter michiganensis
- full scientific name: Clavibacter michiganensis corrig. (Smith 1910) Davis et al. 1984
synonyms
@ref synonym 20215 Bacterium michiganense 20215 Clavibacter michiganense 20215 Corynebacterium michiganense
@ref: 12509
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Clavibacter
species: Clavibacter michiganensis
full scientific name: Clavibacter michiganensis (Smith 1910) Davis et al. 1984 emend. Nouioui et al. 2018
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 12509 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 12509 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
culture temp
- @ref: 12509
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68379 | 17632 | nitrate | - | reduction |
| 68379 | 4853 | esculin | + | hydrolysis |
| 68379 | 16199 | urea | - | hydrolysis |
| 68379 | 5291 | gelatin | - | hydrolysis |
| 68379 | 16988 | D-ribose | - | fermentation |
| 68379 | 65327 | D-xylose | - | fermentation |
| 68379 | 16899 | D-mannitol | - | fermentation |
| 68379 | 17306 | maltose | - | fermentation |
| 68379 | 17716 | lactose | - | fermentation |
| 68379 | 17992 | sucrose | - | fermentation |
| 68379 | 28087 | glycogen | - | fermentation |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68379 | catalase | + | 1.11.1.6 |
| 68379 | gelatinase | - | |
| 68379 | urease | - | 3.5.1.5 |
| 68379 | beta-glucosidase | + | 3.2.1.21 |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68379 | alpha-glucosidase | + | 3.2.1.20 |
| 68379 | beta-galactosidase | + | 3.2.1.23 |
| 68379 | beta-glucuronidase | - | 3.2.1.31 |
| 68379 | alkaline phosphatase | - | 3.1.3.1 |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68379 | pyrazinamidase | - | 3.5.1.B15 |
API coryne
| @ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47865 | - | - | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | + |
Safety information
risk assessment
- @ref: 12509
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 12509
culture collection no.: DSM 46294, CCM 1635, IMET 10903, NCPPB 170, CCUG 23855, LMG 3679
straininfo link
- @ref: 76738
- straininfo: 1777
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12509 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46294) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46294 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 47865 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 23855) | https://www.ccug.se/strain?id=23855 | |
| 68379 | Automatically annotated from API Coryne | |||
| 76738 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1777.1 | StrainInfo: A central database for resolving microbial strain identifiers |