Strain identifier
BacDive ID: 7199
Type strain: 
Species: Methylobacterium goesingense
Strain Designation: iEII3
Strain history: <- P. Kämpfer, Univ. Giessen, Germany; iEII3 <- A. Sessitsch
NCBI tax ID(s): 243690 (species)
version 8.1 (current version)
General
@ref: 15618
BacDive-ID: 7199
DSM-Number: 21331
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Methylobacterium goesingense iEII3 is a mesophilic bacterium that was isolated from endosphere of the Ni-hyperaccumulating plant Thlapi goesingense.
NCBI tax id
- NCBI tax id: 243690
- Matching level: species
strain history
- @ref: 15618
- history: <- P. Kämpfer, Univ. Giessen, Germany; iEII3 <- A. Sessitsch
doi: 10.13145/bacdive7199.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Methylobacteriaceae
- genus: Methylobacterium
- species: Methylobacterium goesingense
- full scientific name: Methylobacterium goesingense Idris et al. 2012
@ref: 15618
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Methylobacteriaceae
genus: Methylobacterium
species: Methylobacterium goesingense
full scientific name: Methylobacterium goesingense Idris et al. 2012
strain designation: iEII3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 15618
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 15618
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|---|
| 15618 | endosphere of the Ni-hyperaccumulating plant Thlapi goesingense | Thlapi goesingense | Austria | AUT | Europe | |
| 60863 | Plant,Thlaspi goesingense,hyperaccumulating | Austria | AUT | Europe | Redschlag |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Endosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_2004.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15368;96_372;97_420;98_479;99_2004&stattab=map
- Last taxonomy: Methylobacterium
- 16S sequence: AY364020
- Sequence Identity:
- Total samples: 14971
- soil counts: 2415
- aquatic counts: 1965
- animal counts: 7622
- plant counts: 2969
Safety information
risk assessment
- @ref: 15618
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15618
- description: Methylobacterium sp. iEII3 16S ribosomal RNA gene, partial sequence
- accession: AY364020
- length: 1476
- database: ena
- NCBI tax ID: 243690
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methylobacterium goesingense DSM 21331 | 2928566807 | draft | img | 243690 |
| 66792 | Methylobacterium goesingense DSM 21331 | GCA_022179225 | contig | ncbi | 243690 |
External links
@ref: 15618
culture collection no.: DSM 21331, CCUG 56109
straininfo link
- @ref: 76652
- straininfo: 400894
literature
- topic: Phylogeny
- Pubmed-ID: 16488569
- title: Characterization of Ni-tolerant methylobacteria associated with the hyperaccumulating plant Thlaspi goesingense and description of Methylobacterium goesingense sp. nov.
- authors: Idris R, Kuffner M, Bodrossy L, Puschenreiter M, Monchy S, Wenzel WW, Sessitsch A
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2006.01.011
- year: 2006
- mesh: DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Drug Resistance, Bacterial, Metals, Heavy/pharmacology, Methylobacterium/*classification/drug effects/genetics/metabolism, Microbial Sensitivity Tests, Molecular Sequence Data, Nickel/*metabolism/*pharmacology, Nucleic Acid Hybridization, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Thlaspi/drug effects/metabolism/*microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 15618 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21331) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21331 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 60863 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 56109) | https://www.ccug.se/strain?id=56109 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 76652 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400894.1 | StrainInfo: A central database for resolving microbial strain identifiers |