Strain identifier

BacDive ID: 6989

Type strain: Yes

Species: Methanococcus maripaludis

Strain Designation: JJ

Strain history: DSM 2067 <-- W. J. Jones JJ.

NCBI tax ID(s): 39152 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 701

BacDive-ID: 6989

DSM-Number: 2067

keywords: genome sequence, 16S sequence, Archaea, anaerobe, mesophilic, Gram-negative

description: Methanococcus maripaludis JJ is an anaerobe, mesophilic, Gram-negative archaeon that was isolated from marine marsh sediment.

NCBI tax id

  • NCBI tax id: 39152
  • Matching level: species

strain history

@refhistory
701<- W. J. Jones, University of Illinois, Urbana, USA; JJ <- W. J. Jones {1974}
67770DSM 2067 <-- W. J. Jones JJ.

doi: 10.13145/bacdive6989.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Methanococci
  • order: Methanococcales
  • family: Methanococcaceae
  • genus: Methanococcus
  • species: Methanococcus maripaludis
  • full scientific name: Methanococcus maripaludis Jones et al. 1984

  • synonyms

    • @ref: 20215
    • synonym: Methanococcus deltae

@ref: 701

domain: Archaea

phylum: Euryarchaeota

class: Methanococci

order: Methanococcales

family: Methanococcaceae

genus: Methanococcus

species: Methanococcus maripaludis

full scientific name: Methanococcus maripaludis Jones et al. 1984

strain designation: JJ

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.988

Culture and growth conditions

culture medium

  • @ref: 701
  • name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/141
  • composition: Name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141) Composition: NaHCO3 4.89237 g/l MgCl2 x 6 H2O 3.91389 g/l Yeast extract 1.95695 g/l Trypticase peptone 1.95695 g/l Na-acetate 0.978474 g/l Na2S x 9 H2O 0.489237 g/l L-Cysteine HCl x H2O 0.489237 g/l KCl 0.332681 g/l NH4Cl 0.244618 g/l K2HPO4 0.136986 g/l MgSO4 x 7 H2O 0.0293542 g/l Nitrilotriacetic acid 0.0146771 g/l NaCl 0.00978474 g/l MnSO4 x H2O 0.00489237 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00195695 g/l CoSO4 x 7 H2O 0.00176125 g/l ZnSO4 x 7 H2O 0.00176125 g/l FeSO4 x 7 H2O 0.000978474 g/l CaCl2 x 2 H2O 0.000978474 g/l Sodium resazurin 0.000489237 g/l NiCl2 x 6 H2O 0.000293542 g/l AlK(SO4)2 x 12 H2O 0.000195695 g/l CuSO4 x 5 H2O 9.78474e-05 g/l Pyridoxine hydrochloride 9.78474e-05 g/l Na2MoO4 x 2 H2O 9.78474e-05 g/l H3BO3 9.78474e-05 g/l Nicotinic acid 4.89237e-05 g/l Riboflavin 4.89237e-05 g/l (DL)-alpha-Lipoic acid 4.89237e-05 g/l Thiamine HCl 4.89237e-05 g/l Calcium D-(+)-pantothenate 4.89237e-05 g/l p-Aminobenzoic acid 4.89237e-05 g/l Folic acid 1.95695e-05 g/l Biotin 1.95695e-05 g/l Na2WO4 x 2 H2O 3.91389e-06 g/l Na2SeO3 x 5 H2O 2.93542e-06 g/l Vitamin B12 9.78474e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
701positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
701anaerobe
69480anaerobe98.987

spore formation

@refspore formationconfidence
69481no100
69480no99.894

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
701marine marsh sedimentSouth Carolina, Pawley's islandUSAUSANorth America
67770Salt marsh sediment near Pawley's IslandSCUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_191917.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17939;96_69441;97_90195;98_122596;99_191917&stattab=map
  • Last taxonomy: Methanococcus
  • 16S sequence: KC139247
  • Sequence Identity:
  • Total samples: 220
  • soil counts: 9
  • aquatic counts: 93
  • animal counts: 118

Safety information

risk assessment

  • @ref: 701
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Methanococcus maripaludis strain JJ 16S ribosomal RNA gene, partial sequenceJQ3467531262ena39152
701Methanococcus maripaludis 16S ribosomal RNA, complete sequenceU384841413ena39152
67770Methanococcus maripaludis strain NBRC 101831 16S ribosomal RNA gene, partial sequenceKC1392471400ena39152

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Methanococcus maripaludis DSM 2067GCA_002945325completencbi39152
66792Methanococcus maripaludis DSM 20672814123256completeimg39152
66792Methanococcus maripaludis strain DSM 206739152.8completepatric39152

GC content

@refGC-contentmethod
70133sequence analysis
6777033.4high performance liquid chromatography (HPLC)
6777033Buoyant density centrifugation (BD)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno95.533no
gram-positiveno96.366no
anaerobicyes98.788yes
halophileno79.38no
spore-formingno95.226no
glucose-utilyes61.915no
aerobicno94.871yes
thermophileno54.228yes
motileno87.266no
glucose-fermentno58.027no

External links

@ref: 701

culture collection no.: DSM 2067, ATCC 43000, JCM 10722, NBRC 101831

straininfo link

  • @ref: 76450
  • straininfo: 41586

literature

  • topic: Genetics
  • Pubmed-ID: 29622618
  • title: Complete Genome Sequence of the Methanococcus maripaludis Type Strain JJ (DSM 2067), a Model for Selenoprotein Synthesis in Archaea.
  • authors: Poehlein A, Heym D, Quitzke V, Fersch J, Daniel R, Rother M
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00237-18
  • year: 2018

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
701Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2067)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2067
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76450Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41586.1StrainInfo: A central database for resolving microbial strain identifiers