Strain identifier

BacDive ID: 6989

Type strain: Yes

Species: Methanococcus maripaludis

Strain Designation: JJ

Strain history: DSM 2067 <-- W. J. Jones JJ.

NCBI tax ID(s): 39152 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.1 (current version)

General

@ref: 701

BacDive-ID: 6989

DSM-Number: 2067

keywords: genome sequence, 16S sequence, Archaea, anaerobe, Gram-negative

description: Methanococcus maripaludis JJ is an anaerobe, Gram-negative archaeon that was isolated from marine marsh sediment.

NCBI tax id

  • NCBI tax id: 39152
  • Matching level: species

strain history

@refhistory
701<- W. J. Jones, University of Illinois, Urbana, USA; JJ <- W. J. Jones {1974}
67770DSM 2067 <-- W. J. Jones JJ.

doi: 10.13145/bacdive6989.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Methanococci
  • order: Methanococcales
  • family: Methanococcaceae
  • genus: Methanococcus
  • species: Methanococcus maripaludis
  • full scientific name: Methanococcus maripaludis Jones et al. 1984
  • synonyms

    • @ref: 20215
    • synonym: Methanococcus deltae

@ref: 701

domain: Archaea

phylum: Euryarchaeota

class: Methanococci

order: Methanococcales

family: Methanococcaceae

genus: Methanococcus

species: Methanococcus maripaludis

full scientific name: Methanococcus maripaludis Jones et al. 1984

strain designation: JJ

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 701
  • name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/141
  • composition: Name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141) Composition: NaHCO3 4.89237 g/l MgCl2 x 6 H2O 3.91389 g/l Yeast extract 1.95695 g/l Trypticase peptone 1.95695 g/l Na-acetate 0.978474 g/l Na2S x 9 H2O 0.489237 g/l L-Cysteine HCl x H2O 0.489237 g/l KCl 0.332681 g/l NH4Cl 0.244618 g/l K2HPO4 0.136986 g/l MgSO4 x 7 H2O 0.0293542 g/l Nitrilotriacetic acid 0.0146771 g/l NaCl 0.00978474 g/l MnSO4 x H2O 0.00489237 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00195695 g/l CoSO4 x 7 H2O 0.00176125 g/l ZnSO4 x 7 H2O 0.00176125 g/l FeSO4 x 7 H2O 0.000978474 g/l CaCl2 x 2 H2O 0.000978474 g/l Sodium resazurin 0.000489237 g/l NiCl2 x 6 H2O 0.000293542 g/l AlK(SO4)2 x 12 H2O 0.000195695 g/l CuSO4 x 5 H2O 9.78474e-05 g/l Pyridoxine hydrochloride 9.78474e-05 g/l Na2MoO4 x 2 H2O 9.78474e-05 g/l H3BO3 9.78474e-05 g/l Nicotinic acid 4.89237e-05 g/l Riboflavin 4.89237e-05 g/l (DL)-alpha-Lipoic acid 4.89237e-05 g/l Thiamine HCl 4.89237e-05 g/l Calcium D-(+)-pantothenate 4.89237e-05 g/l p-Aminobenzoic acid 4.89237e-05 g/l Folic acid 1.95695e-05 g/l Biotin 1.95695e-05 g/l Na2WO4 x 2 H2O 3.91389e-06 g/l Na2SeO3 x 5 H2O 2.93542e-06 g/l Vitamin B12 9.78474e-07 g/l Distilled water

culture temp

@refgrowthtypetemperature
701positivegrowth37
67770positivegrowth37

Physiology and metabolism

oxygen tolerance

  • @ref: 701
  • oxygen tolerance: anaerobe

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
701marine marsh sedimentSouth Carolina, Pawley's islandUSAUSANorth America
67770Salt marsh sediment near Pawley's IslandSCUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_191917.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17939;96_69441;97_90195;98_122596;99_191917&stattab=map
  • Last taxonomy: Methanococcus
  • 16S sequence: KC139247
  • Sequence Identity:
  • Total samples: 220
  • soil counts: 9
  • aquatic counts: 93
  • animal counts: 118

Safety information

risk assessment

  • @ref: 701
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Methanococcus maripaludis culture DSM:2067 16S ribosomal RNA gene, partial sequenceJQ3467531262nuccore39152
701Methanococcus maripaludis 16S ribosomal RNA, complete sequenceU384841413nuccore39152
67770Methanococcus maripaludis strain NBRC 101831 16S ribosomal RNA gene, partial sequenceKC1392471400nuccore39152

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Methanococcus maripaludis DSM 2067GCA_002945325completencbi39152
66792Methanococcus maripaludis DSM 20672814123256completeimg39152
66792Methanococcus maripaludis strain DSM 206739152.8completepatric39152

GC content

@refGC-contentmethod
70133sequence analysis
6777033.4high performance liquid chromatography (HPLC)
6777033Buoyant density centrifugation (BD)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno62.739no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes89.353yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no87.401no
69480spore-formingspore-formingAbility to form endo- or exosporesno89.571no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno69.401no
69480flagellatedmotile2+Ability to perform flagellated movementno85.375no

External links

@ref: 701

culture collection no.: DSM 2067, ATCC 43000, JCM 10722, NBRC 101831

straininfo link

  • @ref: 76450
  • straininfo: 41586

literature

  • topic: Genetics
  • Pubmed-ID: 29622618
  • title: Complete Genome Sequence of the Methanococcus maripaludis Type Strain JJ (DSM 2067), a Model for Selenoprotein Synthesis in Archaea.
  • authors: Poehlein A, Heym D, Quitzke V, Fersch J, Daniel R, Rother M
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00237-18
  • year: 2018

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
701Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2067)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2067
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76450Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41586.1StrainInfo: A central database for resolving microbial strain identifiers