Name: Methanococcus maripaludis JJ
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6989

Type strain:

Species: Methanococcus maripaludis

Strain Designation: JJ

Culture col. no.: DSM 2067, ATCC 43000, JCM 10722, NBRC 101831

Strain history: DSM 2067 <-- W. J. Jones JJ.

NCBI tax ID(s): 39152 (species)

Other strains from Methanococcus maripaludis

M. maripaludis Delta RC, DSM 2771, ATCC 35294
M. maripaludis LL, S2, DSM 14266, JCM 13030, NBRC ...
M. maripaludis JCM 10011, NBRC 102114, OCM 209
M. maripaludis JCM 10012, OCM 363
M. maripaludis JCM 10013, OCM 364

Section

Methanococcus maripaludis JJ is an anaerobe, mesophilic archaeon that was isolated from marine marsh sediment.

anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	"Euryarchaeota"
	Class	Methanococci
	Order	*Methanococcales*
	Family	*Methanococcaceae*
	Genus	*Methanococcus*
	Species	**Methanococcus maripaludis**
	Full Scientific Name (LPSN)	Methanococcus maripaludis Jones et al. 1984

Synonym

Methanococcus deltae

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %99.988

Information on culture and growth conditions Culture and growth conditions

[Ref.: #701]

Culture medium

METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)

[Ref.: #701]

Culture medium growth

[Ref.: #701]

Culture medium link

Medium recipe at MediaDive

[Ref.: #701]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #701]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #701]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #701]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.987

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.894

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #701]	Sample type/isolated from	marine marsh sediment
[Ref.: #701]	Geographic location (country and/or sea, region)	South Carolina, Pawley's island
[Ref.: #701]	Country	USA
[Ref.: #701]	Country ISO 3 Code	USA
[Ref.: #701]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Salt marsh sediment near Pawley's Island
[Ref.: #67770]	Geographic location (country and/or sea, region)	SC
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC139247 (>99% sequence identity) for Methanococcus from Microbeatlas

Aquatic Samples	93
Soil Samples	9
Animal Samples	118
Plant Samples
Total Samples	220

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #701]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methanococcus maripaludis strain NBRC 101831 16S ribosomal RNA gene, partial sequence	KC139247	1400	ENA	39152 tax ID
[Ref.: #701]	Methanococcus maripaludis 16S ribosomal RNA, complete sequence	U38484	1413	ENA	39152 tax ID
[Ref.: #20218]	Methanococcus maripaludis strain JJ 16S ribosomal RNA gene, partial sequence	JQ346753	1262	ENA	39152 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methanococcus maripaludis strain DSM 2067 chromosome, complete genome	CP026606		ENA	39152 tax ID
[Ref.: #66792]	Methanococcus maripaludis DSM 2067	GCA_002945325	complete	GenBank	39152 tax ID	*
[Ref.: #66792]	Methanococcus maripaludis DSM 2067	2814123256	complete	JGI IMG/M	39152 tax ID	*
[Ref.: #66792]	Methanococcus maripaludis strain DSM 2067	39152.8	complete	PATRIC	39152 tax ID	*

[Ref.: #701]	GC-content	33 mol%	sequence analysis
[Ref.: #67770]	GC-content	33.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	33 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanococcus maripaludis DSM 2067 NCBI: GCA_002945325.1
[Ref.: #69480]	gram-positive	no	99.988	yes
[Ref.: #69480]	spore-forming	no	99.894	no
[Ref.: #69480]	anaerobic	yes	98.987	no
[Ref.: #69480]	thermophile	no	93.957	yes
[Ref.: #69480]	motile	no	54.343	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Methanococcus maripaludis DSM 2067 NCBI: GCA_002945325.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #701]

Culture collection no.

DSM 2067, ATCC 43000, JCM 10722, NBRC 101831

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of the Methanococcus maripaludis Type Strain JJ (DSM 2067), a Model for Selenoprotein Synthesis in Archaea.	Poehlein A, Heym D, Quitzke V, Fersch J, Daniel R, Rother M	Genome Announc	10.1128/genomeA.00237-18	2018	*

References

#701	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2067

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Methanococcus maripaludis DSM 2067

Methanococcus maripaludis DSM 2067

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