Name: Methanococcus maripaludis JJ
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6989

Type strain:

Species: Methanococcus maripaludis

Strain Designation: JJ

Culture col. no.: DSM 2067, ATCC 43000, JCM 10722, NBRC 101831

Strain history: DSM 2067 <-- W. J. Jones JJ.

NCBI tax ID(s): 39152 (species)

SI-ID 41586

ATCC 43000, DSM 2067, JCM 10722, NBRC 101831

Special Collections

DSMZ
JCM

Other strains from Methanococcus maripaludis

Section

Methanococcus maripaludis JJ is an anaerobe, Gram-negative archaeon that was isolated from marine marsh sediment.

Gram-negative
anaerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Methanococci*
	Order	*Methanococcales*
	Family	*Methanococcaceae*
	Genus	*Methanococcus*
	Species	**Methanococcus maripaludis**
	Full Scientific Name (LPSN)	Methanococcus maripaludis Jones et al. 1984

Synonym

Methanococcus deltae

Information on culture and growth conditions Culture and growth conditions

[Ref.: #701]

Culture medium

METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)

[Ref.: #701]

Culture medium growth

[Ref.: #701]

Culture medium link

Medium recipe at MediaDive

[Ref.: #701]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #701]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #701]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #701]	Sample type/isolated from	marine marsh sediment
[Ref.: #701]	Geographic location (country and/or sea, region)	South Carolina, Pawley's island
[Ref.: #701]	Country	USA
[Ref.: #701]	Country ISO 3 Code	USA
[Ref.: #701]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Salt marsh sediment near Pawley's Island
[Ref.: #67770]	Geographic location (country and/or sea, region)	SC
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC139247 (>99% sequence identity) for Methanococcus from Microbeatlas

Aquatic Samples	93
Soil Samples	9
Animal Samples	118
Plant Samples
Total Samples	220

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #701]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methanococcus maripaludis strain NBRC 101831 16S ribosomal RNA gene, partial sequence	KC139247	1400	GenBank ENA	39152 tax ID
[Ref.: #701]	Methanococcus maripaludis 16S ribosomal RNA, complete sequence	U38484	1413	GenBank ENA	39152 tax ID
[Ref.: #20218]	Methanococcus maripaludis culture DSM:2067 16S ribosomal RNA gene, partial sequence	JQ346753	1262	GenBank ENA	39152 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanococcus maripaludis DSM 2067	GCA_002945325	complete	GenBank ENA	39152 tax ID	*
[Ref.: #66792]	Methanococcus maripaludis DSM 2067	2814123256	complete	JGI IMG/M	39152 tax ID	*
[Ref.: #66792]	Methanococcus maripaludis strain DSM 2067	39152.8	complete	PATRIC	39152 tax ID	*

[Ref.: #701]	GC-content	33 mol%	sequence analysis
[Ref.: #67770]	GC-content	33.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	33 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Methanococcus maripaludis DSM 2067 NCBI: GCA_002945325.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanococcus maripaludis DSM 2067 NCBI: GCA_002945325.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	62.739	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	89.353	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	87.401	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.571	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	69.401	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.375	no

Availability in culture collections External links

[Ref.: #701]

Culture collection no.

DSM 2067, ATCC 43000, JCM 10722, NBRC 101831

[Ref.: #76450]

SI-ID 41586

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of the Methanococcus maripaludis Type Strain JJ (DSM 2067), a Model for Selenoprotein Synthesis in Archaea.	Poehlein A, Heym D, Quitzke V, Fersch J, Daniel R, Rother M	Genome Announc	10.1128/genomeA.00237-18	2018	*

References

#701	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2067

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76450

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41586.1 )

* These data were automatically processed and therefore are not curated

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Methanococcus maripaludis DSM 2067

Methanococcus maripaludis DSM 2067

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