Strain identifier

BacDive ID: 6747

Type strain: Yes

Species: Legionella jamestowniensis

Strain Designation: JA-26-G1-E2, JA-26-GI-E2

Strain history: CIP <- 1993, R.F. Benson, CDC: strain JA-26-GI-E2 <- G.W. Gorman

NCBI tax ID(s): 1122163 (strain), 455 (species)

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General

@ref: 7973

BacDive-ID: 6747

DSM-Number: 19215

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, human pathogen

description: Legionella jamestowniensis JA-26-G1-E2 is a mesophilic, motile human pathogen that was isolated from wet soil.

NCBI tax id

NCBI tax idMatching level
455species
1122163strain

strain history

@refhistory
7973<- H. E. Müller <- ATCC <- G. W. Gorman; JA-26-G1-E2
120306CIP <- 1993, R.F. Benson, CDC: strain JA-26-GI-E2 <- G.W. Gorman

doi: 10.13145/bacdive6747.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella jamestowniensis
  • full scientific name: Legionella jamestowniensis Brenner et al. 1985

@ref: 7973

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella jamestowniensis

full scientific name: Legionella jamestowniensis Brenner et al. 1985

strain designation: JA-26-G1-E2, JA-26-GI-E2

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes91.598
6948099.999negative
120306yesnegativerod-shaped

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_19215_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19215_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19215_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19215_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19215_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7973BCYE-AGAR (DSMZ Medium 585)yeshttps://mediadive.dsmz.de/medium/585Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
41700MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
120306CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperaturerange
7973positivegrowth37mesophilic
41700positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.996

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
7973wet soilJamestownUSAUSANorth America
49705Wet soil1979
120306Environment, Wet soilJamestown, New YorkUnited States of AmericaUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_85191.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_1036;97_1210;98_59006;99_85191&stattab=map
  • Last taxonomy: Legionella
  • 16S sequence: Z49726
  • Sequence Identity:
  • Total samples: 15
  • soil counts: 2
  • aquatic counts: 11
  • animal counts: 1
  • plant counts: 1

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
7973yes, in single cases1Risk group (German classification)
1203062Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella jamestowniensis strain MDC1586 16S ribosomal RNA gene, partial sequenceJF720376525ena455
20218L.jamestownensis gene for ribosomal RNA, small subunitZ497261414ena455
7973L.jamestowniensis (ATCC 35298) gene for 16S rRNAX734091468ena455

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella jamestowniensis DSM 19215GCA_900114725scaffoldncbi1122163
66792Legionella jamestowniensis JA-26-G1-E2GCA_900640205scaffoldncbi455
66792Legionella jamestowniensis JA-26-G1-E2GCA_001467745scaffoldncbi455
66792Legionella jamestowniensis DSM 192151122163.4wgspatric1122163
66792Legionella jamestowniensis strain JA-26-G1-E2455.5wgspatric455
66792Legionella jamestowniensis DSM 192152600255316draftimg1122163
66792Legionella jamestowniensis JA-26-G1-E22695420441draftimg455

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes87.097no
flagellatedno72.483no
gram-positiveno98.585no
anaerobicno97.59no
aerobicno83.727no
halophileno79.665no
spore-formingno94.401no
thermophileno96.423no
glucose-utilyes60.986no
glucose-fermentno86.462no

External links

@ref: 7973

culture collection no.: DSM 19215, ATCC 35298, CCUG 29669, CIP 103845, NCTC 11981

straininfo link

  • @ref: 76217
  • straininfo: 125848

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7973Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19215)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19215
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41700Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15687
49705Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 29669)https://www.ccug.se/strain?id=29669
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76217Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID125848.1StrainInfo: A central database for resolving microbial strain identifiers
120306Curators of the CIPCollection of Institut Pasteur (CIP 103845)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103845