Legionella jamestowniensis JA-26-G1-E2, JA-26-GI-E2 | Type strain | DSM 19215, ATCC 35298, CCUG 29669, CIP 103845, NCTC 11981 | BacDiveID:6747

Strain identifier

BacDive ID: 6747

Type strain:

Species: Legionella jamestowniensis

Strain Designation: JA-26-G1-E2, JA-26-GI-E2

Culture col. no.: DSM 19215, ATCC 35298, CCUG 29669, CIP 103845, NCTC 11981

Strain history: CIP <- 1993, R.F. Benson, CDC: strain JA-26-GI-E2 <- G.W. Gorman

NCBI tax ID(s): 1122163 (strain), 455 (species)

SI-ID 125848

ATCC 35298, NCTC 11981, CCUG 29669, CIP 103845, JCM 7590, DSM 19215

Section

Legionella jamestowniensis JA-26-G1-E2 is a mesophilic, motile human pathogen that was isolated from wet soil.

motile
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Legionellales*
	Family	*Legionellaceae*
	Genus	*Legionella*
	Species	**Legionella jamestowniensis**
	Full Scientific Name (LPSN)	Legionella jamestowniensis Brenner et al. 1985

Information on morphological and physiological properties Morphology

[Ref.: #120306]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #120306]	Cell shape	rod-shaped

[Ref.: #120306]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %91.598

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BCYE-AGAR (DSMZ Medium 585)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

MEDIUM 23 - for Afipia and Legionella

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #120306]

Culture medium

CIP Medium 23

[Ref.: #120306]

Culture medium growth

[Ref.: #120306]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #7973]			growth	37 °C
[Ref.: #41700]			growth	37 °C

[Ref.: #7973]	Temperature range	mesophilic
[Ref.: #41700]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7973]	Sample type/isolated from	wet soil
[Ref.: #7973]	Geographic location (country and/or sea, region)	Jamestown
[Ref.: #7973]	Country	USA
[Ref.: #7973]	Country ISO 3 Code	USA
[Ref.: #7973]	Continent	North America

[Ref.: #49705]	Sample type/isolated from	Wet soil
[Ref.: #49705]	Sampling date	1979

[Ref.: #120306]	Sample type/isolated from	Environment, Wet soil
[Ref.: #120306]	Geographic location (country and/or sea, region)	Jamestown, New York
[Ref.: #120306]	Country	United States of America
[Ref.: #120306]	Country ISO 3 Code	USA
[Ref.: #120306]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Global distribution of 16S sequence Z49726 (>99% sequence identity) for Legionella from Microbeatlas

Aquatic Samples	11
Soil Samples	2
Animal Samples	1
Plant Samples	1
Total Samples	15

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7973]	Pathogenicity (human)	yes, in single cases
[Ref.: #7973]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120306]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7973]	L.jamestowniensis (ATCC 35298) gene for 16S rRNA	X73409	1468	ENA	455 tax ID
[Ref.: #20218]	L.jamestownensis gene for ribosomal RNA, small subunit	Z49726	1414	ENA	455 tax ID	*
[Ref.: #20218]	Legionella jamestowniensis strain MDC1586 16S ribosomal RNA gene, partial sequence	JF720376	525	ENA	455 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Legionella jamestowniensis DSM 19215	GCA_900114725	scaffold	GenBank	1122163 tax ID	*
[Ref.: #66792]	Legionella jamestowniensis JA-26-G1-E2	GCA_900640205	scaffold	GenBank	455 tax ID	*
[Ref.: #66792]	Legionella jamestowniensis JA-26-G1-E2	GCA_001467745	scaffold	GenBank	455 tax ID	*
[Ref.: #66792]	Legionella jamestowniensis DSM 19215	1122163.4	wgs	PATRIC	1122163 tax ID	*
[Ref.: #66792]	Legionella jamestowniensis strain JA-26-G1-E2	455.5	wgs	PATRIC	455 tax ID	*
[Ref.: #66792]	Legionella jamestowniensis DSM 19215	2600255316	draft	JGI IMG/M	1122163 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Legionella jamestowniensis DSM 19215 DSM 19215 NCBI: GCA_900114725.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Legionella jamestowniensis DSM 19215 DSM 19215 NCBI: GCA_900114725.1
[Ref.: #69480]	motile	yes	87.097	no
[Ref.: #69480]	flagellated	no	72.483	no
[Ref.: #69480]	gram-positive	no	98.585	no
[Ref.: #69480]	anaerobic	no	97.59	no
[Ref.: #69480]	aerobic	no	83.727	no
[Ref.: #69480]	halophile	no	79.665	no
[Ref.: #69480]	spore-forming	no	94.401	no
[Ref.: #69480]	thermophile	no	96.423	no
[Ref.: #69480]	glucose-util	yes	60.986	no
[Ref.: #69480]	glucose-ferment	no	86.462	no

Availability in culture collections External links

Culture collection no.

DSM 19215, ATCC 35298, CCUG 29669, CIP 103845, NCTC 11981

SI-ID 125848

*

References

#7973

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19215

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41700 ; Curators of the CIP;
#49705 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 29669

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76217

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID125848.1 )

#120306 Collection of Institut Pasteur ; Curators of the CIP; CIP 103845
* These data were automatically processed and therefore are not curated

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