Strain identifier

BacDive ID: 6703

Type strain: Yes

Species: Lacticaseibacillus nasuensis

Strain Designation: SU 18

Strain history: Y. Cai SU18.

NCBI tax ID(s): 1291734 (strain), 944671 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 18266

BacDive-ID: 6703

DSM-Number: 26653

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped

description: Lacticaseibacillus nasuensis SU 18 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from sudan grass Sorghum sudanense silage.

NCBI tax id

NCBI tax idMatching level
944671species
1291734strain

strain history

@refhistory
18266<- JCM; JCM 17158
67770Y. Cai SU18.

doi: 10.13145/bacdive6703.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lacticaseibacillus
  • species: Lacticaseibacillus nasuensis
  • full scientific name: Lacticaseibacillus nasuensis (Cai et al. 2012) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus nasuensis

@ref: 18266

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lacticaseibacillus

species: Lacticaseibacillus nasuensis

full scientific name: Lacticaseibacillus nasuensis (Cai et al. 2012) Zheng et al. 2020

strain designation: SU 18

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30252positive8.7-9 µm2.9-3 µmrod-shapedno
69480no97.024
69480positive100

pigmentation

  • @ref: 30252
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 18266
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18266positivegrowth30mesophilic
30252positivegrowth40thermophilic
67770positivegrowth30mesophilic

culture pH

  • @ref: 30252
  • ability: positive
  • type: growth
  • pH: 04-08
  • PH range: acidophile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
18266microaerophile
30252facultative anaerobe

spore formation

@refspore formationconfidence
30252no
69481no100
69480no99.994

halophily

  • @ref: 30252
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
30252168082-dehydro-D-gluconate+carbon source
3025222599arabinose+carbon source
3025217306maltose+carbon source
3025233942ribose+carbon source
3025218222xylose+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

enzymes

  • @ref: 30252
  • value: alpha-galactosidase
  • activity: +
  • ec: 3.2.1.22

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
18266-----+-----+++--------+--+------------------------
18266-----+-----+++--------+---------------------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
18266sudan grass Sorghum sudanense (piper) silageSorghum sudanenseNasushiobara, Tochigi; National Institute of Livestock and Grassland ScienceJapanJPNAsia
67770Sudan grass [Sorghum sudanense (Piper) Stapf.] silageSorghum sudanenseNasushiobara, TochigiJapanJPNAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_6363.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_2517;97_3711;98_4702;99_6363&stattab=map
  • Last taxonomy: Lacticaseibacillus nasuensis subclade
  • 16S sequence: LC519984
  • Sequence Identity:
  • Total samples: 3228
  • soil counts: 83
  • aquatic counts: 104
  • animal counts: 2958
  • plant counts: 83

Safety information

risk assessment

  • @ref: 18266
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
18266Lactobacillus nasuensis gene for, partial sequence, strain: SU 18AB6080511488ena1291734
67770Lactobacillus nasuensis JCM 17158 gene for 16S rRNA, partial sequenceLC5199841507ena944671

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus nasuensis JCM 171581291734.4wgspatric1291734
66792Lactobacillus nasuensis JCM 171581291734.3wgspatric1291734
66792Lacticaseibacillus nasuensis JCM 171582663763169draftimg1291734
66792Lacticaseibacillus nasuensis JCM 171582728369677draftimg1291734
67770Lacticaseibacillus nasuensis JCM 17158GCA_001434705scaffoldncbi1291734
67770Lacticaseibacillus nasuensis JCM 17158GCA_001311255contigncbi1291734

GC content

@refGC-contentmethod
1826659.2
3025258.5
6777057genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno93.977yes
gram-positiveyes96.637yes
anaerobicno94.819yes
aerobicno95.003yes
halophileyes85.096no
spore-formingno94.679yes
thermophileno98.795no
glucose-utilyes91.143no
flagellatedno97.408yes
glucose-fermentyes89.557no

External links

@ref: 18266

culture collection no.: DSM 26653, CGMCC 1.10801, JCM 17158, KCTC 15317, LMG 29535

straininfo link

  • @ref: 76177
  • straininfo: 379070

literature

  • topic: Phylogeny
  • Pubmed-ID: 21724957
  • title: Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus.
  • authors: Cai Y, Pang H, Kitahara M, Ohkuma M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.031781-0
  • year: 2011
  • mesh: Anaerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Gases/metabolism, Glucose/metabolism, Lactic Acid/*metabolism, Lactobacillus/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Ribotyping, Sequence Analysis, DNA, Silage/*microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
18266Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26653)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26653
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30252Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2659428776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76177Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID379070.1StrainInfo: A central database for resolving microbial strain identifiers