Strain identifier

BacDive ID: 6691

Type strain: Yes

Species: Liquorilactobacillus aquaticus

Strain history: CECT 7355 <-- R. Máñes-Lázaro <-- J.-C. Cho and J. Song IMCC 1736.

NCBI tax ID(s): 1423725 (strain), 392566 (species)

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General

@ref: 15481

BacDive-ID: 6691

DSM-Number: 21051

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, motile, rod-shaped

description: Liquorilactobacillus aquaticus DSM 21051 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from surface of a eutrophic freshwater pond.

NCBI tax id

NCBI tax idMatching level
1423725strain
392566species

strain history

@refhistory
15481<- R. Mañes-Lázaro, Univ. Valencia, Campus Burjasot, Spain; IMCC1736 <- J. Song and J.-C. Cho, Inha University, Incheon, Korea
67770CECT 7355 <-- R. Máñes-Lázaro <-- J.-C. Cho and J. Song IMCC 1736.

doi: 10.13145/bacdive6691.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Liquorilactobacillus
  • species: Liquorilactobacillus aquaticus
  • full scientific name: Liquorilactobacillus aquaticus (Mañes-Lázaro et al. 2009) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus aquaticus

@ref: 15481

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Liquorilactobacillus

species: Liquorilactobacillus aquaticus

full scientific name: Liquorilactobacillus aquaticus (Mañes-Lázaro et al. 2009) Zheng et al. 2020

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29191positive2.79 µm1.2 µmrod-shapedyes
69480positive100

Culture and growth conditions

culture medium

  • @ref: 15481
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15481positivegrowth37mesophilic
29191positivegrowth15-45
29191positiveoptimum30mesophilic
67770positivegrowth26mesophilic

culture pH

@refabilitytypepH
29191positivegrowth4.5-8
29191positiveoptimum6.25

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15481microaerophile
29191microaerophile

spore formation

@refspore formationconfidence
29191no
69481no100
69480no99.978

observation

  • @ref: 29191
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2919117057cellobiose+carbon source
2919128757fructose+carbon source
2919117234glucose+carbon source
2919117306maltose+carbon source
2919129864mannitol+carbon source
2919137684mannose+carbon source
29191506227N-acetylglucosamine+carbon source
2919117814salicin+carbon source
2919117992sucrose+carbon source
2919127082trehalose+carbon source
291914853esculin+hydrolysis

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
15481surface of a eutrophic freshwater pondRepublic of KoreaKORAsia
67770Korean freshwater pond

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Pond (small)
#Environmental#Aquatic#Surface water

taxonmaps

  • @ref: 69479
  • File name: preview.99_2233.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1207;97_1430;98_1741;99_2233&stattab=map
  • Last taxonomy: Liquorilactobacillus
  • 16S sequence: LC519860
  • Sequence Identity:
  • Total samples: 1924
  • soil counts: 39
  • aquatic counts: 57
  • animal counts: 1693
  • plant counts: 135

Safety information

risk assessment

  • @ref: 15481
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
15481Lactobacillus aquaticus strain IMCC1736 16S ribosomal RNA gene, partial sequenceDQ6642031528ena392566
67770Lactobacillus aquaticus JCM 16869 gene for 16S rRNA, partial sequenceLC5198601500ena392566

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus aquaticus DSM 210511423725.3wgspatric1423725
66792Liquorilactobacillus aquaticus DSM 210512667527752draftimg1423725
67770Liquorilactobacillus aquaticus DSM 21051GCA_001436755scaffoldncbi1423725

GC content

@refGC-contentmethod
1548139.15±0.07high performance liquid chromatography (HPLC)
2919139.15
6777037.4genome sequence analysis
6777039.15high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes74.936yes
gram-positiveyes92.584yes
anaerobicno88.45yes
halophileyes73.497no
spore-formingno88.326yes
glucose-utilyes85.982yes
aerobicno95.944yes
flagellatedno81.581no
glucose-fermentyes84.465no
thermophileno98.714yes

External links

@ref: 15481

culture collection no.: DSM 21051, CECT 7355, IMCC 1736, JCM 16869

straininfo link

  • @ref: 76165
  • straininfo: 293947

literature

  • topic: Phylogeny
  • Pubmed-ID: 19620384
  • title: Lactobacillus aquaticus sp. nov., isolated from a Korean freshwater pond.
  • authors: Manes-Lazaro R, Song J, Pardo I, Cho JC, Ferrer S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.008276-0
  • year: 2009
  • mesh: Bacterial Typing Techniques, Carbohydrate Metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fermentation, Fresh Water/*microbiology, Genotype, Hydrogen-Ion Concentration, Korea, Lactobacillus/*classification/genetics/*isolation & purification/physiology, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique/methods, Sequence Analysis, DNA, Sodium Chloride/metabolism
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15481Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21051)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21051
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29191Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2561528776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76165Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID293947.1StrainInfo: A central database for resolving microbial strain identifiers