Strain identifier

BacDive ID: 6689

Type strain: Yes

Species: Companilactobacillus tucceti

Strain Designation: R 19c

Strain history: CIP <- 2009, CECT <- G. Reuter <- M. Carmen Macian, CECT, Valencia Univ., Burjassot, Spain: strain R 19c

NCBI tax ID(s): 1423811 (strain), 238012 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 8459

BacDive-ID: 6689

DSM-Number: 20183

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic

description: Companilactobacillus tucceti R 19c is a facultative anaerobe, mesophilic bacterium that was isolated from sausage.

NCBI tax id

NCBI tax idMatching level
238012species
1423811strain

strain history

@refhistory
8459<- G. Reuter, R 19c
67770CECT 5920 <-- DSM 20183 <-- G. Reuter R 19c.
123681CIP <- 2009, CECT <- G. Reuter <- M. Carmen Macian, CECT, Valencia Univ., Burjassot, Spain: strain R 19c

doi: 10.13145/bacdive6689.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Companilactobacillus
  • species: Companilactobacillus tucceti
  • full scientific name: Companilactobacillus tucceti (Chenoll et al. 2009) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus tucceti

@ref: 8459

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Companilactobacillus

species: Companilactobacillus tucceti

full scientific name: Companilactobacillus tucceti (Chenoll et al. 2009) Zheng et al. 2020

strain designation: R 19c

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no96.373
69480100positive
123681nopositiverod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8459MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
40641MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
123681CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
8459positivegrowth30mesophilic
40641positivegrowth37mesophilic
67770positivegrowth30mesophilic
123681positivegrowth15-37
123681nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 123681
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

murein

  • @ref: 8459
  • murein short key: A11.42
  • type: A4alpha L-Lys-Gly-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12368117632nitrate-reduction
12368116301nitrite-reduction
12368117632nitrate+respiration

metabolite tests

  • @ref: 123681
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
123681oxidase-
123681alcohol dehydrogenase-1.1.1.1
123681catalase-1.11.1.6
123681lysine decarboxylase-4.1.1.18
123681ornithine decarboxylase-4.1.1.17

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123681--+--++---++----+---

Isolation, sampling and environmental information

isolation

@refsample typeisolation date
8459sausage
67770Sausage
123681Food, Meat, sausage1970

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Meat

taxonmaps

  • @ref: 69479
  • File name: preview.99_6768.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1756;97_2100;98_4992;99_6768&stattab=map
  • Last taxonomy: Companilactobacillus
  • 16S sequence: LC521976
  • Sequence Identity:
  • Total samples: 481
  • soil counts: 55
  • aquatic counts: 32
  • animal counts: 359
  • plant counts: 35

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
84591Risk group (German classification)
1236811Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
8459Lactobacillus sp. CECT 5920 16S rRNA gene, strain CECT 5920AJ5760061557ena238012
67770Lactobacillus tucceti JCM 18037 gene for 16S rRNA, partial sequenceLC5219761513ena238012

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus tucceti DSM 201831423811.3wgspatric1423811
66792Lactobacillus tucceti DSM 201832657245013draftimg1423811
67770Companilactobacillus tucceti DSM 20183GCA_001434665scaffoldncbi1423811

GC content

@refGC-contentmethod
845935.6
6777034.1genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.744no
gram-positiveyes96.279no
anaerobicno93.924no
halophileyes92.781no
spore-formingno96.185no
glucose-utilyes91.871no
thermophileno99.606yes
aerobicno94.098no
flagellatedno98.653no
glucose-fermentyes88.311no

External links

@ref: 8459

culture collection no.: DSM 20183, CECT 5920, JCM 18037, CIP 110049, KCTC 21005

straininfo link

  • @ref: 76163
  • straininfo: 49585

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16824960Lactobacillus tucceti sp. nov., a new lactic acid bacterium isolated from sausage.Chenoll E, Carmen Macian M, Aznar RSyst Appl Microbiol10.1016/j.syapm.2005.09.0062005DNA, Ribosomal/analysis, Deoxyribonucleases, Type II Site-Specific/metabolism, Lactobacillus/classification/*isolation & purification/metabolism, Meat Products/*microbiology, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain ReactionMetabolism
Phylogeny19126729Lactobacillus nodensis sp. nov., isolated from rice bran.Kashiwagi T, Suzuki T, Kamakura TInt J Syst Evol Microbiol10.1099/ijs.0.65772-02009Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/genetics, Fermentation, Genes, rRNA, Japan, Lactobacillus/*classification/genetics/*isolation & purification/physiology, Nucleic Acid Hybridization, Oryza/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityTranscriptome
Phylogeny26486967Lactobacillus insicii sp. nov., isolated from fermented raw meat.Ehrmann MA, Krockel L, Lick S, Radmann P, Bantleon A, Vogel RFInt J Syst Evol Microbiol10.1099/ijsem.0.0007052015Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Dipeptides/chemistry, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Lactobacillus/*cytology/genetics/isolation & purification, Meat Products/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, SwineBiotechnology
Phylogeny30010525Lactobacillus terrae sp. nov., a novel species isolated from soil samples in the Republic of Korea.Kim HJ, Lee HJ, Lim B, Kim E, Kim HY, Suh M, Hur MInt J Syst Evol Microbiol10.1099/ijsem.0.0029182018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lactobacillus/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8459Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20183)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20183
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
40641Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7863
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76163Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49585.1StrainInfo: A central database for resolving microbial strain identifiers
123681Curators of the CIPCollection of Institut Pasteur (CIP 110049)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110049