Companilactobacillus tucceti (DSM 20183, CECT 5920, R 19c)

Name: Companilactobacillus tucceti (DSM 20183, CECT 5920, R 19c)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6689

Type strain

Strain Designation R 19c

Culture col. no. DSM 20183 CECT 5920 R 19c KCTC 21005 CIP 110049 1 more

NCBI tax ID(s) 1423811 238012

Special Collections DSMZ JCM KCTC CIP

Links

Companilactobacillus tucceti R 19c is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from sausage.

Gram-positive rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 49585

DSM 20183,CECT 5920,CIP 110049,LMG 26188,JCM 18037,BCC 48809

@ref 20215

Last LPSN update 2025-12-16 09:48:23

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Companilactobacillus

Species Companilactobacillus tucceti

Full scientific name Companilactobacillus tucceti (Chenoll et al. 2009) Zheng et al. 2020

Synonyms (1)

Lactobacillus tucceti

Morphology

Cell morphology

@ref	Gram stain	Cell shape
123681	positive	rod-shaped
125438
125438	positive

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8459	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
40641	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
123681	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8459	positive	growth	30	mesophilic
40641	positive	growth	37	mesophilic
67770	positive	growth	30	mesophilic
123681	positive	growth	15-37
123681	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
123681	facultative anaerobe
125439	obligate aerobe

Murein

@ref	Murein short key	Type
8459	A11.42	A4alpha L-Lys-Gly-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123681	17632 ChEBI	nitrate	-	reduction
123681	17632 ChEBI	nitrate	+	respiration
123681	16301 ChEBI	nitrite	-	reduction

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
123681	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123681	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123681	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
123681	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123681	ornithine decarboxylase	-	4.1.1.17
123681	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	acetoin degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	peptidoglycan biosynthesis	93.33	14 of 15
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	palmitate biosynthesis	81.82	18 of 22
66794	flavin biosynthesis	80	12 of 15
66794	serine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	purine metabolism	74.47	70 of 94
66794	pentose phosphate pathway	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	photosynthesis	71.43	10 of 14
66794	Entner Doudoroff pathway	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	vitamin B1 metabolism	69.23	9 of 13
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	degradation of hexoses	66.67	12 of 18
66794	valine metabolism	66.67	6 of 9
66794	NAD metabolism	66.67	12 of 18
66794	glycolysis	64.71	11 of 17
66794	gluconeogenesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	cysteine metabolism	61.11	11 of 18
66794	factor 420 biosynthesis	60	3 of 5
66794	threonine metabolism	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	pyrimidine metabolism	57.78	26 of 45
66794	propanol degradation	57.14	4 of 7
66794	histidine metabolism	55.17	16 of 29
66794	oxidative phosphorylation	53.85	49 of 91
66794	degradation of pentoses	53.57	15 of 28
66794	degradation of sugar acids	52	13 of 25
66794	suberin monomers biosynthesis	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	ribulose monophosphate pathway	50	1 of 2
66794	tetrahydrofolate metabolism	50	7 of 14
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	glycogen biosynthesis	50	2 of 4
66794	isoleucine metabolism	50	4 of 8
66794	butanoate fermentation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	lipid metabolism	48.39	15 of 31
66794	alanine metabolism	48.28	14 of 29
66794	glutamate and glutamine metabolism	46.43	13 of 28
66794	proline metabolism	45.45	5 of 11
66794	d-mannose degradation	44.44	4 of 9
66794	degradation of sugar alcohols	43.75	7 of 16
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	mevalonate metabolism	42.86	3 of 7
66794	non-pathway related	42.11	16 of 38
66794	myo-inositol biosynthesis	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	methylglyoxal degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	urea cycle	38.46	5 of 13
66794	lysine metabolism	38.1	16 of 42
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	CO2 fixation in Crenarchaeota	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	arginine metabolism	33.33	8 of 24
66794	enterobactin biosynthesis	33.33	1 of 3
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	leucine metabolism	30.77	4 of 13
66794	starch degradation	30	3 of 10
66794	tryptophan metabolism	28.95	11 of 38
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	tyrosine metabolism	28.57	4 of 14
66794	metabolism of disaccharids	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	carnitine metabolism	25	2 of 8
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	CMP-KDO biosynthesis	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	sulfate reduction	23.08	3 of 13
66794	arachidonic acid metabolism	22.22	4 of 18
66794	nitrate assimilation	22.22	2 of 9
66794	chorismate metabolism	22.22	2 of 9
66794	glutathione metabolism	21.43	3 of 14
66794	citric acid cycle	21.43	3 of 14
66794	vitamin B12 metabolism	20.59	7 of 34

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123681	-	-	+	-	-	+	+	-	-	-	+	+	-	-	-	-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Meat

Isolation

@ref	Sample type
8459	sausage
67770	Sausage
123681	Food, Meat, sausage

Taxonmaps

69479

Global distribution of 16S sequence LC521976 (>99% sequence identity) for Companilactobacillus from Microbeatlas

Aquatic Samples	32
Soil Samples	55
Animal Samples	359
Plant Samples	35
Total Samples	481

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8459	1	Risk group (German classification) According to TRBA 466
123681	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM143466v1 assembly for Companilactobacillus tucceti DSM 20183	scaffold	GCA_001434665	1423811.3	2657245013	1423811	66.89

Genome browser: GCA_001434665

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8459	Lactobacillus sp. CECT 5920 16S rRNA gene, strain CECT 5920	AJ576006	1557		238012
67770	Lactobacillus tucceti JCM 18037 gene for 16S rRNA, partial sequence	LC521976	1513		238012

GC content

@ref	GC-content (mol%)
8459	35.6
67770	34.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Companilactobacillus tucceti DSM 20183
NCBI: GCA_001434665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	81.10	no
125439	motility	BacteriaNetⓘ	no	65.10	no
125439	gram_stain	BacteriaNetⓘ	positive	85.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus tucceti DSM 20183
PATRIC: 1423811.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.90	no
125438	anaerobic	anaerobicⓘ	no	81.44	no
125438	spore-forming	spore-formingⓘ	no	84.70	no
125438	aerobic	aerobicⓘ	no	93.31	yes
125438	thermophilic	thermophileⓘ	no	96.00	no
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus terrae sp. nov., a novel species isolated from soil samples in the Republic of Korea.	Kim HJ, Lee HJ, Lim B, Kim E, Kim HY, Suh M, Hur M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002918	2018
Phylogeny	Lactobacillus insicii sp. nov., isolated from fermented raw meat.	Ehrmann MA, Krockel L, Lick S, Radmann P, Bantleon A, Vogel RF	Int J Syst Evol Microbiol	10.1099/ijsem.0.000705	2015
Phylogeny	Lactobacillus tucceti sp. nov., a new lactic acid bacterium isolated from sausage.	Chenoll E, Carmen Macian M, Aznar R	Syst Appl Microbiol	10.1016/j.syapm.2005.09.006	2005
Phylogeny	Lactobacillus nodensis sp. nov., isolated from rice bran.	Kashiwagi T, Suzuki T, Kamakura T	Int J Syst Evol Microbiol	10.1099/ijs.0.65772-0	2009

References

#8459	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20183
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40641	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123681	Collection of Institut Pasteur ; Curators of the CIP; CIP 110049
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Companilactobacillus tucceti (DSM 20183, CECT 5920, R 19c)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Metabolite utilization

Metabolite tests

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001434665

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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