Strain identifier

BacDive ID: 6530

Type strain: Yes

Species: Paucilactobacillus suebicus

Strain Designation: I, WC-t4-15, l

Strain history: CIP <- 1990, DSMZ <- W.P. Hammes <- H. Heinzl: strain l

NCBI tax ID(s): 152335 (species)

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General

@ref: 1904

BacDive-ID: 6530

DSM-Number: 5007

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Paucilactobacillus suebicus I is an anaerobe, mesophilic bacterium that was isolated from apple mash.

NCBI tax id

  • NCBI tax id: 152335
  • Matching level: species

strain history

@refhistory
1904<- W.P. Hammes <- H. Heinzl, I
67770NRIC 1637 <-- DSM 5007 <-- W. P. Hammes <-- H. Heinzl.
123371CIP <- 1990, DSMZ <- W.P. Hammes <- H. Heinzl: strain l

doi: 10.13145/bacdive6530.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Paucilactobacillus
  • species: Paucilactobacillus suebicus
  • full scientific name: Paucilactobacillus suebicus (Kleynmans et al. 1989) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus suebicus

@ref: 1904

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Paucilactobacillus

species: Paucilactobacillus suebicus

full scientific name: Paucilactobacillus suebicus (Kleynmans et al. 1989) Zheng et al. 2020

strain designation: I, WC-t4-15, l

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no96.508
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1904LACTOBACILLUS MEDIUM II (DSMZ Medium 93)yeshttps://mediadive.dsmz.de/medium/93Name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93) Composition: Na-acetate 20.0 g/l Glucose 20.0 g/l Agar 15.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Meat extract 2.0 g/l K2HPO4 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l DL-mevalonic acid 0.03 g/l FeSO4 x 7 H2O 0.01 g/l MnSO4 x H2O 0.0075 g/l Tween 80 Ethanol Distilled water
33074MEDIUM 41- for Lactobacillus, Leuconostoc, Weissella, Pediococcus, Sporolactobacillus inulinusyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp broth (55.000 g)
123371CIP Medium 41yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=41

culture temp

@refgrowthtypetemperaturerange
1904positivegrowth30mesophilic
33074positivegrowth37mesophilic
50916positivegrowth30-37mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
1904anaerobe
1904microaerophile
50916anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.992

murein

  • @ref: 1904
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside+builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

metabolite production

@refChebi-IDmetaboliteproduction
6777016236ethanolyes
6777024996lactateyes

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
1904----+++--+-+----------------+----------------+----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
1904apple mash
50916Apple mash
67770Apple mashes
123371Food, Apple mashGermanyDEUEurope

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production

taxonmaps

  • @ref: 69479
  • File name: preview.99_7222.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_563;97_653;98_1325;99_7222&stattab=map
  • Last taxonomy: Paucilactobacillus suebicus
  • 16S sequence: LC071852
  • Sequence Identity:
  • Total samples: 600
  • soil counts: 28
  • aquatic counts: 46
  • animal counts: 440
  • plant counts: 86

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
19041Risk group (German classification)
1233711Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus suebicus 16S rRNA gene, strain CCUG 32233AJ3064031402ena152335
20218Lactobacillus suebicus 16S rRNA gene, strain CECT 5917TAJ5757441573ena152335
20218Lactobacillus suebicus partial 16S rRNA gene, strain type strain:DSM 5007AM1137851566ena152335
20218Lactobacillus suebicus strain DSM 5007 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequenceEU161605794ena152335
20218Lactobacillus suebicus gene for 16S rRNA, partial sequence, strain: JCM 9504AB289309654ena152335
67770Lactobacillus suebicus gene for 16S ribosomal RNA, partial sequence, strain: JCM 9504LC0718521513ena152335

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus suebicus DSM 5007 = KCTC 35491423807.3wgspatric1423807
66792Lactobacillus suebicus KCTC 35491046595.4wgspatric1423807
66792Paucilactobacillus suebicus DSM 50072700989154draftimg1423807
66792Paucilactobacillus suebicus KCTC 35492513237369draftimg1423807
67770Paucilactobacillus suebicus DSM 5007 = KCTC 3549GCA_001434475contigncbi1423807
67770Paucilactobacillus suebicus DSM 5007 = KCTC 3549GCA_000260395contigncbi1423807

GC content

@refGC-contentmethod
190440.7
6777040.7thermal denaturation, midpoint method (Tm)
6777039genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.886no
gram-positiveyes97.705no
anaerobicno94.848no
halophileyes92.061no
spore-formingno94.857no
thermophileno99.231yes
glucose-utilyes89.264no
aerobicno96.528yes
flagellatedno97.834no
glucose-fermentyes89.247no

External links

@ref: 1904

culture collection no.: DSM 5007, ATCC 49375, CCUG 32233, JCM 9504, BCRC 14736, CECT 5917, CIP 103411, KCTC 3549, LMG 11408, NCFB 2783, NCIMB 702783, NRIC 1637

straininfo link

  • @ref: 76002
  • straininfo: 92325

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics21914862Genome sequence of Lactobacillus suebicus KCTC 3549.Nam SH, Choi SH, Kang A, Kim DW, Kim RN, Kim DS, Kim A, Park HSJ Bacteriol10.1128/JB.05814-112011Base Composition/genetics, Genome, Bacterial/*genetics, Lactobacillus/*genetics, Molecular Sequence Data
Phylogeny23223820Lactobacillus hokkaidonensis sp. nov., isolated from subarctic timothy grass (Phleum pratense L.) silage.Tohno M, Kitahara M, Uegaki R, Irisawa T, Ohkuma M, Tajima KInt J Syst Evol Microbiol10.1099/ijs.0.047027-02012Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Bacterial, Japan, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phleum/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Silage/*microbiologyGenetics
Phylogeny26475452Lactobacillus wasatchensis sp. nov., a non-starter lactic acid bacteria isolated from aged Cheddar cheese.Oberg CJ, Oberg TS, Culumber MD, Ortakci F, Broadbent JR, McMahon DJInt J Syst Evol Microbiol10.1099/ijsem.0.0006892015Bacterial Typing Techniques, Base Composition, Cheese/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Lactic Acid/metabolism, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1904Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5007)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5007
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33074Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15206
50916Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 32233)https://www.ccug.se/strain?id=32233
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76002Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92325.1StrainInfo: A central database for resolving microbial strain identifiers
123371Curators of the CIPCollection of Institut Pasteur (CIP 103411)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103411