Paucilactobacillus suebicus (DSM 5007, ATCC 49375, CCUG 32233)

Name: Paucilactobacillus suebicus (DSM 5007, ATCC 49375, CCUG 32233)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6530

Type strain

Strain Designation I, WC-t4-15, l

Culture col. no. DSM 5007 ATCC 49375 CCUG 32233 I WC-t4-15 10 more

NCBI tax ID(s) 152335

Special Collections DSMZ CCUG JCM KCTC CIP

History <- W.P. Hammes <- H. Heinzl, I NRIC 1637 <-- DSM 5007 <-- W. P. Hammes <-- H. Heinzl. CIP <- 1990, DSMZ <- W.P. Hammes <- H. Heinzl: strain l

Links

Paucilactobacillus suebicus I is an anaerobe, mesophilic prokaryote that was isolated from apple mash.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92325

LMG 11408,ATCC 49375,CIP 103411,DSM 5007,NCFB 2783,CCUG 32233,JCM 9504,NCIMB 702783,CECT 5917,KCTC 3549,BCRC 14736,CCRC 14736

@ref 20215

Last LPSN update 2026-02-09 11:19:14

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Paucilactobacillus

Species Paucilactobacillus suebicus

Full scientific name Paucilactobacillus suebicus (Kleynmans et al. 1989) Zheng et al. 2020

Synonyms (1)

Lactobacillus suebicus

BacDive ID	Other strains from **Paucilactobacillus suebicus** (1)	Type strain
6531	P. suebicus WC-t7-2, X, DSM 5008, ATCC 49376

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		90
125438		95.881	positive

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1904	LACTOBACILLUS MEDIUM II (DSMZ Medium 93)	Medium recipe at MediaDive	Name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93) Composition: Na-acetate 20.0 g/l Glucose 20.0 g/l Agar 15.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Meat extract 2.0 g/l K2HPO4 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l DL-mevalonic acid 0.03 g/l FeSO4 x 7 H2O 0.01 g/l MnSO4 x H2O 0.0075 g/l Tween 80 Ethanol Distilled water
33074	MEDIUM 41- for Lactobacillus, Leuconostoc, Weissella, Pediococcus, Sporolactobacillus inulinus		Distilled water make up to (1000.000 ml);Man Rogosa Sharp broth (55.000 g)
123371	CIP Medium 41	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1904	positive	growth	30	mesophilic
33074	positive	growth	37	mesophilic
50916	positive	growth	30-37	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
1904	anaerobe
1904	microaerophile
50916	anaerobe
125439	microaerophile	93.2

Murein

@ref	Murein short key	Type
1904	A31	A1gamma m-Dpm-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	+	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	+	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770	16236 ChEBI	ethanol
67770	24996 ChEBI	lactate

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
1904	-	-	-	-	+	+	+	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Food production

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
1904	apple mash
50916	Apple mash
67770	Apple mashes
123371	Food, Apple mash	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence LC071852 (>99% sequence identity) for Paucilactobacillus suebicus from Microbeatlas

Aquatic Samples	46
Soil Samples	28
Animal Samples	440
Plant Samples	86
Total Samples	600

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1904	1	Risk group (German classification) According to TRBA 466
123371	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Paucilactobacillus suebicus KCTC 3549	complete			2513237369	1423807	99.12
67770	ASM143447v1 assembly for Paucilactobacillus suebicus DSM 5007 = KCTC 3549	contig	GCA_001434475	1423807.3	2700989154	1423807	62.34
67770	ASM26039v1 assembly for Paucilactobacillus suebicus DSM 5007 = KCTC 3549	contig	GCA_000260395	1046595.4		1423807	50.63

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Lactobacillus suebicus 16S rRNA gene, strain CCUG 32233	AJ306403	1402	152335
20218	Lactobacillus suebicus 16S rRNA gene, strain CECT 5917T	AJ575744	1573	152335
20218	Lactobacillus suebicus partial 16S rRNA gene, strain type strain:DSM 5007	AM113785	1566	152335
20218	Lactobacillus suebicus strain DSM 5007 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence	EU161605	794	152335
20218	Lactobacillus suebicus gene for 16S rRNA, partial sequence, strain: JCM 9504	AB289309	654	152335
67770	Lactobacillus suebicus gene for 16S ribosomal RNA, partial sequence, strain: JCM 9504	LC071852	1513	152335

GC content

@ref	GC-content (mol%)	Method
1904	40.7
67770	40.7	thermal denaturation, midpoint method (Tm)
67770	39	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paucilactobacillus suebicus DSM 5007 = KCTC 3549
NCBI: GCA_001434475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	93.20	no
125439	gram_stain	BacteriaNetⓘ	positive	89.50	no
125439	motility	BacteriaNetⓘ	no	76.10	no
125439	spore_formation	BacteriaNetⓘ	no	88.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus suebicus DSM 5007 = KCTC 3549
PATRIC: 1423807.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	95.88	no
125438	anaerobic	anaerobicⓘ	no	81.70	no
125438	spore-forming	spore-formingⓘ	no	86.67	no
125438	aerobic	aerobicⓘ	no	94.20	yes
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Lactiplantibacillus sp. G6 isolated from goose intestine as starter culture for degrading nitrite and improving quality in Chinese pickle fermentation.	Lan Z, Huang H, Liu C, Li J, Li X.	Food Sci Biotechnol	10.1007/s10068-023-01433-8	2024
Metabolism	A Novel D-Galacturonate Fermentation Pathway in Lactobacillus suebicus Links Initial Reactions of the Galacturonate-Isomerase Route With the Phosphoketolase Pathway.	Valk LC, Luttik MAH, de Ram C, Pabst M, van den Broek M, van Loosdrecht MCM, Pronk JT.	Front Microbiol	10.3389/fmicb.2019.03027	2019
Genetics	Genome sequence of Lactobacillus suebicus KCTC 3549.	Nam SH, Choi SH, Kang A, Kim DW, Kim RN, Kim DS, Kim A, Park HS	J Bacteriol	10.1128/JB.05814-11	2011
Phylogeny	Lactobacillus wasatchensis sp. nov., a non-starter lactic acid bacteria isolated from aged Cheddar cheese.	Oberg CJ, Oberg TS, Culumber MD, Ortakci F, Broadbent JR, McMahon DJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000689	2015
Phylogeny	Lactobacillus hokkaidonensis sp. nov., isolated from subarctic timothy grass (Phleum pratense L.) silage.	Tohno M, Kitahara M, Uegaki R, Irisawa T, Ohkuma M, Tajima K	Int J Syst Evol Microbiol	10.1099/ijs.0.047027-0	2012

References

#1904	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5007
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#33074	; Curators of the CIP;
#50916	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32233
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123371	Collection of Institut Pasteur ; Curators of the CIP; CIP 103411
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paucilactobacillus suebicus (DSM 5007, ATCC 49375, CCUG 32233)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Metabolite utilization

Metabolite production

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001434475

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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