Strain identifier

BacDive ID: 6500

Type strain: No

Species: Lactiplantibacillus plantarum subsp. plantarum

Strain history: T. Mitsuoka S2-26 <-- ISL <-- ATCC 10012 <-- J. Alsberg <-- R. Kuhn 10 S ("Streptobacterium plantarum").

NCBI tax ID(s): 337330 (subspecies)

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General

@ref: 8657

BacDive-ID: 6500

DSM-Number: 20246

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Lactiplantibacillus plantarum subsp. plantarum DSM 20246 is a mesophilic human pathogen of the family Lactobacillaceae.

NCBI tax id

  • NCBI tax id: 337330
  • Matching level: subspecies

strain history

@refhistory
8657<- ATCC <- J. Alsberg <- R. Kuhn (Streptobacterium plantarum 10S)
67770ATCC 10012 <-- J. Alsberg <-- R. Kuhn 10 S ("Streptobacterium plantarum").
67770T. Mitsuoka S2-26 <-- ISL <-- ATCC 10012 <-- J. Alsberg <-- R. Kuhn 10 S ("Streptobacterium plantarum").

doi: 10.13145/bacdive6500.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactiplantibacillus
  • species: Lactiplantibacillus plantarum subsp. plantarum
  • full scientific name: Lactiplantibacillus plantarum subsp. plantarum (Orla-Jensen 1919) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus plantarum subsp. plantarum

@ref: 8657

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactiplantibacillus

species: Lactiplantibacillus plantarum subsp. plantarum

full scientific name: Lactiplantibacillus plantarum subsp. plantarum (Orla-Jensen 1919) Zheng et al. 2020

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no97.543
69480100positive

Culture and growth conditions

culture medium

  • @ref: 8657
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8657positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.998

murein

  • @ref: 8657
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

observation

  • @ref: 67770
  • observation: Assay of p-Aminobenzoic acid

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside+builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8657----++----++++----+++-+++++++++++-++---+++++++++--
8657----++----++++----+++-+++++++++++-+----++------+--

Safety information

risk assessment

  • @ref: 8657
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactiplantibacillus plantarum DSM 20246GCA_001888665contigncbi1590
66792Lactobacillus plantarum strain DSM 202461590.346wgspatric1590

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.107no
gram-positiveyes95.93no
anaerobicno89.145no
aerobicno97.194no
halophileyes84.333no
spore-formingno92.991no
thermophileno99.897yes
glucose-utilyes92.302no
flagellatedno96.468no
glucose-fermentyes89.509no

External links

@ref: 8657

culture collection no.: DSM 20246, ATCC 10012, NCDO 352, NCIB 8016, JCM 1055, BCRC 14059, JCM 1550, KCTC 3105, NCFB 352, NCIMB 8016

straininfo link

  • @ref: 75973
  • straininfo: 12053

Reference

@idauthorscataloguedoi/urltitle
8657Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20246)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20246
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75973Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID12053.1StrainInfo: A central database for resolving microbial strain identifiers