Strain identifier

BacDive ID: 6467

Type strain: No

Species: Lactobacillus gasseri

Strain Designation: V 4020/4079

Strain history: <- U. Dickgießer, V 4020/4079

NCBI tax ID(s): 1596 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8952

BacDive-ID: 6467

DSM-Number: 20604

keywords: Bacteria, anaerobe, human pathogen

description: Lactobacillus gasseri V 4020/4079 is an anaerobe human pathogen that was isolated from septic urinary infection.

NCBI tax id

  • NCBI tax id: 1596
  • Matching level: species

strain history

  • @ref: 8952
  • history: <- U. Dickgießer, V 4020/4079

doi: 10.13145/bacdive6467.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus gasseri
  • full scientific name: Lactobacillus gasseri Lauer and Kandler 1980

@ref: 8952

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus gasseri

full scientific name: Lactobacillus gasseri Lauer and Kandler 1980

strain designation: V 4020/4079

type strain: no

Culture and growth conditions

culture medium

  • @ref: 8952
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

  • @ref: 8952
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8952anaerobe
8952microaerophile

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8952-----------++-------------++---++/-------+----------

Isolation, sampling and environmental information

isolation

  • @ref: 8952
  • sample type: septic urinary infection

isolation source categories

Cat1Cat2
#Infection#Disease
#Host Body-Site#Urogenital tract

Safety information

risk assessment

  • @ref: 8952
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

External links

@ref: 8952

culture collection no.: DSM 20604

straininfo link

  • @ref: 75940
  • straininfo: 49655

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology20075040Inulin and levan synthesis by probiotic Lactobacillus gasseri strains: characterization of three novel fructansucrase enzymes and their fructan products.Anwar MA, Kralj S, Pique AV, Leemhuis H, van der Maarel MJEC, Dijkhuizen LMicrobiology (Reading)10.1099/mic.0.036616-02010Bacterial Proteins/chemistry/*genetics/metabolism, Cloning, Molecular, Fructans/*metabolism, Glycoside Hydrolases/*chemistry/*genetics/metabolism, Inulin/*metabolism, Kinetics, Lactobacillus/chemistry/*enzymology/genetics/metabolism, Molecular Sequence Data, Probiotics/*metabolism, Substrate SpecificityMetabolism
Enzymology23645191Enzymatic synthesis and characterization of fructooligosaccharides and novel maltosylfructosides by inulosucrase from Lactobacillus gasseri DSM 20604.Diez-Municio M, de las Rivas B, Jimeno ML, Munoz R, Moreno FJ, Herrero MAppl Environ Microbiol10.1128/AEM.00854-132013*Bioreactors, Chromatography, Affinity, Chromatography, Liquid, Cloning, Molecular, DNA Primers/genetics, Electrophoresis, Polyacrylamide Gel, Gas Chromatography-Mass Spectrometry, Hexosyltransferases/*metabolism, Hydrogen-Ion Concentration, Lactobacillus/*enzymology, Magnetic Resonance Spectroscopy, Maltose, Oligosaccharides/*biosynthesis, Rosaniline Dyes, Sucrose, Temperature, Time Factors, Trisaccharides/*biosynthesisMetabolism
Enzymology26940051Synthesis and structural characterization of raffinosyl-oligofructosides upon transfructosylation by Lactobacillus gasseri DSM 20604 inulosucrase.Diez-Municio M, Herrero M, de Las Rivas B, Munoz R, Jimeno ML, Moreno FJAppl Microbiol Biotechnol10.1007/s00253-016-7405-z2016Culture Media/chemistry, Fructans/chemistry, Fructose/chemistry, Hexosyltransferases/*metabolism, Industrial Microbiology, Lactobacillus gasseri/*enzymology, Magnetic Resonance Imaging, Melibiose/chemistry, Raffinose/*chemistry, Recombinant Proteins/metabolism, Sucrose/chemistryMetabolism
Enzymology28433290Synthesis of potentially-bioactive lactosyl-oligofructosides by a novel bi-enzymatic system using bacterial fructansucrases.Diez-Municio M, Gonzalez-Santana C, de Las Rivas B, Jimeno ML, Munoz R, Moreno FJ, Herrero MFood Res Int10.1016/j.foodres.2015.09.0352015
Enzymology29169948Biosynthesis of inulin from sucrose using inulosucrase from Lactobacillus gasseri DSM 20604.Ni D, Zhu Y, Xu W, Bai Y, Zhang T, Mu WInt J Biol Macromol10.1016/j.ijbiomac.2017.11.1202017Amino Acid Sequence, Cloning, Molecular, Enzyme Activation, Enzyme Stability, Gene Expression, Hexosyltransferases/*chemistry/genetics/isolation & purification/*metabolism, Hydrogen-Ion Concentration, Inulin/*biosynthesis/*chemistry, Lactobacillus gasseri/*enzymology/genetics, Magnetic Resonance Spectroscopy, Molecular Weight, Recombinant Proteins/genetics/metabolism, Sequence Analysis, DNA, Spectroscopy, Fourier Transform Infrared, Sucrose/*chemistry/*metabolism, TemperatureMetabolism
Metabolism32366099Production and Physicochemical Properties of Food-Grade High-Molecular-Weight Lactobacillus Inulin.Ni D, Zhu Y, Xu W, Pang X, Lv J, Mu WJ Agric Food Chem10.1021/acs.jafc.9b078942020Bacillus subtilis/genetics/metabolism, Inulin/*chemistry/genetics/*metabolism, Lactobacillus/chemistry/*metabolism, Molecular WeightBiotechnology
33291830Fermentation by Probiotic Lactobacillus gasseri Strains Enhances the Carotenoid and Fibre Contents of Carrot Juice.Xu Y, Hlaing MM, Glagovskaia O, Augustin MA, Terefe NSFoods10.3390/foods91218032020
Metabolism33895646High-resolution method for isocratic HPLC analysis of inulin-type fructooligosaccharides.Wienberg F, Hovels M, Kosciow K, Deppenmeier UJ Chromatogr B Analyt Technol Biomed Life Sci10.1016/j.jchromb.2020.1225052020Escherichia coli/genetics/*metabolism, Hexosyltransferases/chemistry, *Inulin/analysis, Lactobacillus gasseri/enzymology, *Oligosaccharides/analysis, Prebiotics/*analysis, Recombinant Proteins/chemistryEnzymology
Biotechnology36380213High-yield production and purification of prebiotic inulin-type fructooligosaccharides.Wienberg F, Hovels M, Deppenmeier UAMB Express10.1186/s13568-022-01485-92022Enzymology

Reference

@idauthorscataloguedoi/urltitle
8952Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20604)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20604
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68371Automatically annotated from API 50CH acid
75940Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49655.1StrainInfo: A central database for resolving microbial strain identifiers