Strain identifier
BacDive ID: 6398
Type strain: 
Species: Pediococcus ethanolidurans
Strain Designation: Z-9
Strain history: LMG 23957 <-- B. Zhang; Inst. of Microbiol., CAS, China; Z-9.
NCBI tax ID(s): 319653 (species)
version 8.1 (current version)
General
@ref: 16264
BacDive-ID: 6398
DSM-Number: 22301
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Pediococcus ethanolidurans Z-9 is a microaerophile, mesophilic bacterium that was isolated from walls of a distilled-spirit-fermenting cellar.
NCBI tax id
- NCBI tax id: 319653
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16264 | <- LMG; LMG 23957 <- B. Zhang, CAS |
| 67770 | LMG 23957 <-- B. Zhang; Inst. of Microbiol., CAS, China; Z-9. |
doi: 10.13145/bacdive6398.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Pediococcus
- species: Pediococcus ethanolidurans
- full scientific name: Pediococcus ethanolidurans Liu et al. 2006
@ref: 16264
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Pediococcus
species: Pediococcus ethanolidurans
full scientific name: Pediococcus ethanolidurans Liu et al. 2006
strain designation: Z-9
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 94.507 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 16264
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16264 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 16264
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16264 | walls of a distilled-spirit-fermenting cellar | Hebei Province | China | CHN | Asia |
| 67770 | Walls of a distilled-spirit-fermenting cellar | Hebei Province | China | CHN | Asia |
isolation source categories
- Cat1: #Engineered
- Cat2: #Built environment
taxonmaps
- @ref: 69479
- File name: preview.99_7876.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_156;97_167;98_186;99_7876&stattab=map
- Last taxonomy: Pediococcus ethanolidurans
- 16S sequence: AY956789
- Sequence Identity:
- Total samples: 2348
- soil counts: 68
- aquatic counts: 65
- animal counts: 2114
- plant counts: 101
Safety information
risk assessment
- @ref: 16264
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16264
- description: Pediococcus ethanolidurans strain Z-9 16S ribosomal RNA gene, partial sequence
- accession: AY956789
- length: 1501
- database: ena
- NCBI tax ID: 319653
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pediococcus ethanolidurans strain CGMCC 1.3889 | 319653.4 | wgs | patric | 319653 |
| 66792 | Pediococcus ethanolidurans strain DSM 22301 | 319653.3 | wgs | patric | 319653 |
| 66792 | Pediococcus ethanolidurans strain NBRC 106104 | 319653.5 | wgs | patric | 319653 |
| 66792 | Pediococcus ethanolidurans CGMCC 1.3889 | 2617270883 | draft | img | 319653 |
| 66792 | Pediococcus ethanolidurans DSM 22301 | 2657245032 | draft | img | 319653 |
| 67770 | Pediococcus ethanolidurans NBRC 106104 | GCA_007991575 | contig | ncbi | 319653 |
| 67770 | Pediococcus ethanolidurans CGMCC 1.3889 | GCA_900111205 | scaffold | ncbi | 319653 |
| 67770 | Pediococcus ethanolidurans DSM 22301 | GCA_001437405 | contig | ncbi | 319653 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 16264 | 39.5 | |
| 67770 | 39 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | yes | 94.46 | no |
| anaerobic | no | 92.517 | yes |
| halophile | yes | 91.595 | no |
| spore-forming | no | 94.348 | no |
| glucose-util | yes | 93.55 | no |
| motile | no | 94.126 | no |
| flagellated | no | 98.3 | no |
| aerobic | no | 97.037 | yes |
| thermophile | no | 99.437 | yes |
| glucose-ferment | yes | 87.932 | no |
External links
@ref: 16264
culture collection no.: DSM 22301, LMG 23957, AS 1.3889, JCM 30913, CGMCC 1.3889, LMG 23354, NBRC 106104, NCIMB 14553
straininfo link
- @ref: 75871
- straininfo: 294352
literature
- topic: Phylogeny
- Pubmed-ID: 17012570
- title: Pediococcus ethanolidurans sp. nov., isolated from the walls of a distilled-spirit-fermenting cellar.
- authors: Liu L, Zhang B, Tong H, Dong X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64407-0
- year: 2006
- mesh: Alcoholic Beverages/*microbiology, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Ethanol/metabolism, Fermentation, Genes, rRNA, Genotype, Lactic Acid/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Pediococcus/*classification/genetics/*isolation & purification/physiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16264 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22301) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22301 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 75871 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID294352.1 | StrainInfo: A central database for resolving microbial strain identifiers |