Pediococcus ethanolidurans (DSM 22301, LMG 23957, AS 1.3889)

Name: Pediococcus ethanolidurans (DSM 22301, LMG 23957, AS 1.3889)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6398

Type strain

Strain Designation Z-9

Culture col. no. DSM 22301 LMG 23957 AS 1.3889 Z-9 NCIMB 14553 4 more

NCBI tax ID(s) 319653

Special Collections DSMZ JCM

History <- LMG; LMG 23957 <- B. Zhang, CAS LMG 23957 <-- B. Zhang; Inst. of Microbiol., CAS, China; Z-9.

Links

Pediococcus ethanolidurans Z-9 is a microaerophile, mesophilic prokaryote that was isolated from walls of a distilled-spirit-fermenting cellar.

microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 294352

NBRC106104,LMG 23957,AS 1.3889,LMG 23354,JCM 30913,DSM 22301

@ref 20215

Last LPSN update 2026-02-09 11:19:12

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Pediococcus

Species Pediococcus ethanolidurans

Full scientific name Pediococcus ethanolidurans Liu et al. 2006

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		92
125438		93.867	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16264	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16264	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
16264	microaerophile
125439	obligate aerobe	98.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Built environment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16264	walls of a distilled-spirit-fermenting cellar	Hebei Province	China	CHN	Asia
67770	Walls of a distilled-spirit-fermenting cellar	Hebei Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY956789 (>99% sequence identity) for Pediococcus ethanolidurans from Microbeatlas

Aquatic Samples	65
Soil Samples	68
Animal Samples	2114
Plant Samples	101
Total Samples	2348

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16264	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2617270883 annotated assembly for Pediococcus ethanolidurans CGMCC 1.3889	scaffold	GCA_900111205	319653.4	2617270883	319653	61.09
67770	ASM143740v1 assembly for Pediococcus ethanolidurans DSM 22301	contig	GCA_001437405	319653.3	2657245032	319653	59.06
67770	ASM799157v1 assembly for Pediococcus ethanolidurans NBRC 106104	contig	GCA_007991575	319653.5		319653	54.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16264	Pediococcus ethanolidurans strain Z-9 16S ribosomal RNA gene, partial sequence	AY956789	1501		319653
124043	Pediococcus ethanolidurans gene for 16S rRNA, partial sequence, strain: NBRC 106104.	AB682363	1503		319653

GC content

@ref	GC-content (mol%)	Method
16264	39.5
67770	39	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pediococcus ethanolidurans CGMCC 1.3889
NCBI: GCA_900111205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	82.40	no
125439	motility	BacteriaNetⓘ	yes	69.70	no
125439	gram_stain	BacteriaNetⓘ	variable	71.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pediococcus ethanolidurans strain CGMCC 1.3889
PATRIC: 319653.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.87	no
125438	anaerobic	anaerobicⓘ	no	82.93	yes
125438	spore-forming	spore-formingⓘ	no	89.38	no
125438	aerobic	aerobicⓘ	no	94.00	yes
125438	thermophilic	thermophileⓘ	no	98.38	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	A Diverse Range of Human Gut Bacteria Have the Potential To Metabolize the Dietary Component Gallic Acid.	Esteban-Torres M, Santamaria L, Cabrera-Rubio R, Plaza-Vinuesa L, Crispie F, de Las Rivas B, Cotter P, Munoz R.	Appl Environ Microbiol	10.1128/aem.01558-18	2018
Phylogeny	Pediococcus ethanolidurans sp. nov., isolated from the walls of a distilled-spirit-fermenting cellar.	Liu L, Zhang B, Tong H, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.64407-0	2006

References

#16264	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22301
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pediococcus ethanolidurans (DSM 22301, LMG 23957, AS 1.3889)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900111205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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