Strain identifier

BacDive ID: 6300

Type strain: Yes

Species: Tetrasphaera jenkinsii

Strain history: NCIMB 14128 <-- R. J. Seviour Ben 74.

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7038

BacDive-ID: 6300

DSM-Number: 17519

keywords: mesophilic, Bacteria, 16S sequence, genome sequence

description: Tetrasphaera jenkinsii DSM 17519 is a mesophilic bacterium that was isolated from activated sludge system.

NCBI tax id

NCBI tax idMatching level
1193518strain
330834species

strain history

doi: 10.13145/bacdive6300.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Intrasporangiaceae
  • genus: Tetrasphaera
  • species: Tetrasphaera jenkinsii
  • full scientific name: Tetrasphaera jenkinsii McKenzie et al. 2006

@ref: 7038

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Intrasporangiaceae

genus: Tetrasphaera

species: Tetrasphaera jenkinsii

full scientific name: Tetrasphaera jenkinsii McKenzie et al. 2006 emend. Nouioui et al. 2018

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 7038
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l Na-pyruvate 0.3 g/l K2HPO4 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7038positivegrowth25mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7038activated sludge systemGlenelg, S.A.AustraliaAUSAustralia and Oceania
67770Activated sludge systemAustraliaAUSAustralia and Oceania

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Activated sludge

Safety information

risk assessment

  • @ref: 7038
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7038
  • description: Tetrasphaera jenkinsii strain Ben 74 16S ribosomal RNA gene, partial sequence
  • accession: DQ007321
  • length: 1421
  • database: ena
  • NCBI tax ID: 1193518

Genome sequences

  • @ref: 67770
  • description: Tetrasphaera jenkinsii Ben 74, whole genome shotgun sequencing project
  • accession: CAJC00000000
  • database: ncbi
  • NCBI tax ID: 1193518

GC content

  • @ref: 67770
  • GC-content: 68.24
  • method: genome sequence analysis

External links

@ref: 7038

culture collection no.: DSM 17519, NCIMB 14128, Ben 74, JCM 15590, KCTC 39575

straininfo link

@refpassport
20218http://www.straininfo.net/strains/690573
20218http://www.straininfo.net/strains/690574

literature

  • topic: Phylogeny
  • Pubmed-ID: 17012548
  • title: Isolates of 'Candidatus Nostocoida limicola' Blackall et al. 2000 should be described as three novel species of the genus Tetrasphaera, as Tetrasphaera jenkinsii sp. nov., Tetrasphaera vanveenii sp. nov. and Tetrasphaera veronensis sp. nov.
  • authors: McKenzie CM, Seviour EM, Schumann P, Maszenan AM, Liu JR, Webb RI, Monis P, Saint CP, Steiner U, Seviour RJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63978-0
  • year: 2006
  • mesh: Actinobacteria/chemistry/*classification/genetics/isolation & purification, Actinomycetales/chemistry/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal Spacer/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA, Sewage/microbiology, Species Specificity
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7038Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17519)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17519
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/