Strain identifier
BacDive ID: 6300
Type strain: 
Species: Tetrasphaera jenkinsii
Strain history: NCIMB 14128 <-- R. J. Seviour Ben 74.
NCBI tax ID(s): 1193518 (strain), 330834 (species)
version 8.1 (current version)
General
@ref: 7038
BacDive-ID: 6300
DSM-Number: 17519
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Tetrasphaera jenkinsii DSM 17519 is a mesophilic bacterium that was isolated from activated sludge system.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 330834 | species |
| 1193518 | strain |
strain history
| @ref | history |
|---|---|
| 7038 | <- R. J. Seviour; Ben 74 <- E. M. Seviour |
| 67770 | NCIMB 14128 <-- R. J. Seviour Ben 74. |
doi: 10.13145/bacdive6300.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Intrasporangiaceae
- genus: Tetrasphaera
- species: Tetrasphaera jenkinsii
- full scientific name: Tetrasphaera jenkinsii McKenzie et al. 2006
@ref: 7038
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Intrasporangiaceae
genus: Tetrasphaera
species: Tetrasphaera jenkinsii
full scientific name: Tetrasphaera jenkinsii McKenzie et al. 2006 emend. Nouioui et al. 2018
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7038
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7038 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7038 | activated sludge system | Glenelg, S.A. | Australia | AUS | Australia and Oceania |
| 67770 | Activated sludge system | Australia | AUS | Australia and Oceania |
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Activated sludge
taxonmaps
- @ref: 69479
- File name: preview.99_4658.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1391;97_2813;98_3495;99_4658&stattab=map
- Last taxonomy: Tetrasphaera jenkinsii
- 16S sequence: DQ007321
- Sequence Identity:
- Total samples: 1816
- soil counts: 119
- aquatic counts: 1498
- animal counts: 186
- plant counts: 13
Safety information
risk assessment
- @ref: 7038
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7038
- description: Tetrasphaera jenkinsii strain Ben 74 16S ribosomal RNA gene, partial sequence
- accession: DQ007321
- length: 1421
- database: ena
- NCBI tax ID: 1193518
Genome sequences
- @ref: 67770
- description: Tetrasphaera jenkinsii Ben 74
- accession: GCA_001046875
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1193518
GC content
- @ref: 67770
- GC-content: 68.24
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 97.352 | no |
| flagellated | no | 98.658 | no |
| gram-positive | yes | 86.217 | no |
| anaerobic | no | 97.632 | no |
| aerobic | yes | 86.783 | no |
| halophile | no | 97.59 | no |
| spore-forming | no | 88.155 | no |
| thermophile | no | 95.316 | yes |
| glucose-util | yes | 88.056 | no |
| glucose-ferment | no | 88.463 | no |
External links
@ref: 7038
culture collection no.: DSM 17519, NCIMB 14128, Ben 74, JCM 15590, KCTC 39575
straininfo link
- @ref: 75775
- straininfo: 297353
literature
- topic: Phylogeny
- Pubmed-ID: 17012548
- title: Isolates of 'Candidatus Nostocoida limicola' Blackall et al. 2000 should be described as three novel species of the genus Tetrasphaera, as Tetrasphaera jenkinsii sp. nov., Tetrasphaera vanveenii sp. nov. and Tetrasphaera veronensis sp. nov.
- authors: McKenzie CM, Seviour EM, Schumann P, Maszenan AM, Liu JR, Webb RI, Monis P, Saint CP, Steiner U, Seviour RJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63978-0
- year: 2006
- mesh: Actinobacteria/chemistry/*classification/genetics/isolation & purification, Actinomycetales/chemistry/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal Spacer/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA, Sewage/microbiology, Species Specificity
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7038 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17519) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17519 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 75775 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297353.1 | StrainInfo: A central database for resolving microbial strain identifiers |