Nostocoides jenkinsii (DSM 17519, NCIMB 14128, Ben 74)

Name: Nostocoides jenkinsii (DSM 17519, NCIMB 14128, Ben 74)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6300

Type strain

Culture col. no. DSM 17519 NCIMB 14128 Ben 74 KCTC 39575 JCM 15590

NCBI tax ID(s) 330834

Special Collections DSMZ JCM KCTC

Links

Nostocoides jenkinsii DSM 17519 is a mesophilic prokaryote that was isolated from activated sludge system.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 297353

DSM 17519,NCIMB 14128,JCM 15590

@ref 20215

Last LPSN update 2025-12-16 09:48:17

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Intrasporangiaceae

Genus Nostocoides

Species Nostocoides jenkinsii

Full scientific name Nostocoides jenkinsii (McKenzie et al. 2006) Deshmukh and Oren 2024

Synonyms (1)

Tetrasphaera jenkinsii

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7038	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
7038	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7038	positive	growth	25	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: MK-8(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7038	activated sludge system	Glenelg, S.A.	Australia	AUS	Australia and Oceania
67770	Activated sludge system		Australia	AUS	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence DQ007321 (>99% sequence identity) for Tetrasphaera jenkinsii from Microbeatlas

Aquatic Samples	1498
Soil Samples	119
Animal Samples	186
Plant Samples	13
Total Samples	1816

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7038	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM104687v1 assembly for Nostocoides jenkinsii Ben 74	scaffold	GCA_001046875	1193518.4	2630968945	1193518	30.29

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7038	Tetrasphaera jenkinsii strain Ben 74 16S ribosomal RNA gene, partial sequence	DQ007321	1421		1193518

GC content

@ref	GC-content (mol%)	Method
67770	68.24	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tetrasphaera jenkinsii Ben 74 Ben 74
NCBI: GCA_001046875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.54	no
125438	anaerobic	anaerobicⓘ	no	94.77	no
125438	aerobic	aerobicⓘ	yes	83.10	no
125438	spore-forming	spore-formingⓘ	no	72.49	no
125438	thermophilic	thermophileⓘ	no	95.99	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tessaracoccus lapidicaptus sp. nov., an actinobacterium isolated from the deep subsurface of the Iberian pyrite belt.	Puente-Sanchez F, Sanchez-Roman M, Amils R, Parro V.	Int J Syst Evol Microbiol	10.1099/ijs.0.060038-0	2014
Phylogeny	Pleomorphobacterium xiamenense gen. nov., sp. nov., a moderate thermophile isolated from a terrestrial hot spring.	Yin D, Chen L, Ao J, Ai C, Chen X.	Int J Syst Evol Microbiol	10.1099/ijs.0.042713-0	2013
Phylogeny	Salinarimonas ramus sp. nov. and Tessaracoccus oleiagri sp. nov., isolated from a crude oil-contaminated saline soil.	Cai M, Wang L, Cai H, Li Y, Wang YN, Tang YQ, Wu XL.	Int J Syst Evol Microbiol	10.1099/ijs.0.025932-0	2011
Phylogeny	Isolates of 'Candidatus Nostocoida limicola' Blackall et al. 2000 should be described as three novel species of the genus Tetrasphaera, as Tetrasphaera jenkinsii sp. nov., Tetrasphaera vanveenii sp. nov. and Tetrasphaera veronensis sp. nov.	McKenzie CM, Seviour EM, Schumann P, Maszenan AM, Liu JR, Webb RI, Monis P, Saint CP, Steiner U, Seviour RJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63978-0	2006

References

#7038	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17519
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nostocoides jenkinsii (DSM 17519, NCIMB 14128, Ben 74)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001046875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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