Name: Tetrasphaera jenkinsii DSM 17519
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6300

Type strain:

Species: Tetrasphaera jenkinsii

Culture col. no.: DSM 17519, NCIMB 14128, Ben 74, JCM 15590, KCTC 39575

Strain history: NCIMB 14128 <-- R. J. Seviour Ben 74.

NCBI tax ID(s): 1193518 (strain), 330834 (species)

SI-ID 297353

DSM 17519, NCIMB 14128, JCM 15590

Section

Tetrasphaera jenkinsii DSM 17519 is a mesophilic bacterium that was isolated from activated sludge system.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Intrasporangiaceae*
	Genus	Tetrasphaera
	Species	Tetrasphaera jenkinsii
	Full Scientific Name (LPSN)	Tetrasphaera jenkinsii McKenzie et al. 2006

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7038]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7038]

Culture medium growth

[Ref.: #7038]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7038]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7038]			growth	25 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #7038]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7038]	Sample type/isolated from	activated sludge system
[Ref.: #7038]	Geographic location (country and/or sea, region)	Glenelg, S.A.
[Ref.: #7038]	Country	Australia
[Ref.: #7038]	Country ISO 3 Code	AUS
[Ref.: #7038]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Activated sludge system
[Ref.: #67770]	Country	Australia
[Ref.: #67770]	Country ISO 3 Code	AUS
[Ref.: #67770]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Activated sludge

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ007321 (>99% sequence identity) for Tetrasphaera jenkinsii from Microbeatlas

Aquatic Samples	1498
Soil Samples	119
Animal Samples	186
Plant Samples	13
Total Samples	1816

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7038]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7038]	Tetrasphaera jenkinsii strain Ben 74 16S ribosomal RNA gene, partial sequence	DQ007321	1421	ENA	1193518 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Tetrasphaera jenkinsii Ben 74	GCA_001046875	scaffold	GenBank	1193518 tax ID

[Ref.: #67770]

GC-content

68.24 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tetrasphaera jenkinsii Ben 74 Ben 74 NCBI: GCA_001046875.1
[Ref.: #69480]	motile	no	97.352	no
[Ref.: #69480]	flagellated	no	98.658	no
[Ref.: #69480]	gram-positive	yes	86.217	no
[Ref.: #69480]	anaerobic	no	97.632	no
[Ref.: #69480]	aerobic	yes	86.783	no
[Ref.: #69480]	halophile	no	97.59	no
[Ref.: #69480]	spore-forming	no	88.155	no
[Ref.: #69480]	thermophile	no	95.316	yes
[Ref.: #69480]	glucose-util	yes	88.056	no
[Ref.: #69480]	glucose-ferment	no	88.463	no

Availability in culture collections External links

[Ref.: #7038]

Culture collection no.

DSM 17519, NCIMB 14128, Ben 74, JCM 15590, KCTC 39575

[Ref.: #75775]

SI-ID 297353

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolates of 'Candidatus Nostocoida limicola' Blackall et al. 2000 should be described as three novel species of the genus Tetrasphaera, as Tetrasphaera jenkinsii sp. nov., Tetrasphaera vanveenii sp. nov. and Tetrasphaera veronensis sp. nov.	McKenzie CM, Seviour EM, Schumann P, Maszenan AM, Liu JR, Webb RI, Monis P, Saint CP, Steiner U, Seviour RJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63978-0	2006	*

References

#7038

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17519

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75775

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297353.1 )

* These data were automatically processed and therefore are not curated

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Tetrasphaera jenkinsii Ben 74 Ben 74

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