Archive BacDiveID:10.13145/bacdive6266.20230509.8.1

Strain identifier

BacDive ID: 6266

Type strain:

Species: Janibacter corallicola

Strain Designation: 04PA2-C05-61

Strain history: DSM 18906 <-- H. Kasai <-- M. Hirose 04PA2-Co5-61.

NCBI tax ID(s): 1216969 (strain), 415212 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 7615

BacDive-ID: 6266

DSM-Number: 18906

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Janibacter corallicola 04PA2-C05-61 is a mesophilic bacterium that was isolated from hard coral .

NCBI tax id

NCBI tax id	Matching level
1216969	strain
415212	species

strain history

@ref	history
7615	<- Hiroaki Kasai <- M. Hirose, 04PA2-Co5-61
67770	DSM 18906 <-- H. Kasai <-- M. Hirose 04PA2-Co5-61.

doi: 10.13145/bacdive6266.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Intrasporangiaceae
genus: Janibacter
species: Janibacter corallicola
full scientific name: Janibacter corallicola Kageyama et al. 2007

@ref: 7615

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Intrasporangiaceae

genus: Janibacter

species: Janibacter corallicola

full scientific name: Janibacter corallicola Kageyama et al. 2007

strain designation: 04PA2-C05-61

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	no	93.61
69480		100	positive

Culture and growth conditions

culture medium

@ref: 7615
name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
growth: yes
link: https://mediadive.dsmz.de/medium/514
composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
7615	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

spore formation

@ref	spore formation	confidence
69481	no	100
69480	no	99.98

observation

@ref: 67770
observation: quinones: MK-8(H₄)

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent	host species
7615	hard coral (Acropora gemmifera)	Palau	Palau	PLW	Australia and Oceania
67770	Hard coral (Acropora gemmifera) at depths of 3-5 m in Angauru Coral Garden		Palau	PLW	Australia and Oceania	Acropora gemmifera

isolation source categories

Cat1: #Host
Cat2: #Invertebrates (Other)
Cat3: #Cnidaria (Corals)

Safety information

risk assessment

@ref: 7615
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 7615
description: Janibacter corallicola gene for 16S rRNA, partial sequence, strain: 04PA2-Co5-61
accession: AB286023
length: 1473
database: ena
NCBI tax ID: 415212

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Janibacter corallicola NBRC 107790	1216969.3	wgs	patric	1216969
66792	Janibacter corallicola NBRC 107790	2731957612	draft	img	1216969
67770	Janibacter corallicola NBRC 107790	GCA_001570965	contig	ncbi	1216969

GC content

@ref	GC-content	method
7615	70
67770	70-71	high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	100	no
motile	no	94.133	no
gram-positive	yes	91.595	no
anaerobic	no	97.817	no
aerobic	yes	87.461	no
halophile	no	71.55	no
spore-forming	no	89.016	no
thermophile	no	93.64	yes
glucose-util	yes	88.969	no
flagellated	no	98.535	no
glucose-ferment	no	90.205	no

External links

@ref: 7615

culture collection no.: DSM 18906, JCM 15571, MBIC 08265, NBRC 107790

straininfo link

@ref: 75743
straininfo: 403334

literature

topic: Phylogeny
Pubmed-ID: 17726299
title: Janibacter corallicola sp. nov., isolated from coral in Palau.
authors: Kageyama A, Takahashi Y, Yasumoto-Hirose M, Kasai H, Shizuri Y, Omura S
journal: J Gen Appl Microbiol
DOI: 10.2323/jgam.53.185
year: 2007
mesh: Actinomycetales/classification/*isolation & purification/metabolism, Animals, Anthozoa/*microbiology, Fatty Acids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics
topic2: Enzymology

Reference

@id	authors	catalogue	doi/url	title
7615	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18906)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-18906
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
75743	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID403334.1	StrainInfo: A central database for resolving microbial strain identifiers