Strain identifier
BacDive ID: 6146
Type strain: 
Species: Thiobacillus thioparus
Strain Designation: TK-m
Strain history: <- D.P. Kelly <- T. Kanagawa, TK-m (derived from strain TK-1)
NCBI tax ID(s): 931 (species)
version 9 (current version)
General
@ref: 2007
BacDive-ID: 6146
DSM-Number: 5368
keywords: 16S sequence, Bacteria
description: Thiobacillus thioparus TK-m is a bacterium that was isolated from activated sludge.
NCBI tax id
- NCBI tax id: 931
- Matching level: species
strain history
- @ref: 2007
- history: <- D.P. Kelly <- T. Kanagawa, TK-m (derived from strain TK-1)
doi: 10.13145/bacdive6146.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Nitrosomonadales
- family: Thiobacillaceae
- genus: Thiobacillus
- species: Thiobacillus thioparus
- full scientific name: Thiobacillus thioparus Beijerinck 1904 (Approved Lists 1980)
@ref: 2007
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Hydrogenophilales
family: Thiobacillaceae
genus: Thiobacillus
species: Thiobacillus thioparus
full scientific name: Thiobacillus thioparus Beijerinck 1904
strain designation: TK-m
type strain: no
Morphology
colony morphology
- @ref: 2007
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 2007
- name: THIOBACILLUS THIOPARUS (TK-M) MEDIUM (DSMZ Medium 486)
- growth: yes
- link: https://mediadive.dsmz.de/medium/486
- composition: Name: THIOBACILLUS THIOPARUS (TK-m) MEDIUM (DSMZ Medium 486) Composition: Agar 15.0 g/l Na2S2O3 x 5 H2O 5.0 g/l K2HPO4 2.0 g/l KH2PO4 2.0 g/l Na2CO3 0.4 g/l NH4Cl 0.4 g/l MgCl2 x 6 H2O 0.2 g/l Na2-EDTA 0.05 g/l ZnSO4 x 7 H2O 0.011 g/l NaOH 0.011 g/l CaCl2 x 2 H2O 0.00734 g/l FeSO4 x 7 H2O 0.005 g/l MnCl2 x 4 H2O 0.0025 g/l (NH4)6Mo7O24 x 4 H2O 0.0005 g/l CoCl2 x 6 H2O 0.0005 g/l CuSO4 x 5 H2O 0.0002 g/l Nicotinic acid 6e-05 g/l Pyridoxine hydrochloride 6e-05 g/l Riboflavin 6e-05 g/l Calcium pantothenate 6e-05 g/l Thiamine-HCl x 2 H2O 3e-05 g/l p-Aminobenzoic acid 3e-05 g/l Biotin 3e-06 g/l Vitamin B12 3e-06 g/l Bromocresol purple Distilled water
culture temp
- @ref: 2007
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 2007
- sample type: activated sludge
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Activated sludge
taxonmaps
- @ref: 69479
- File name: preview.99_4650.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_421;96_1931;97_2322;98_2865;99_4650&stattab=map
- Last taxonomy: Thiobacillus thioparus
- 16S sequence: GU967681
- Sequence Identity:
- Total samples: 62
- soil counts: 14
- aquatic counts: 45
- animal counts: 1
- plant counts: 2
Safety information
risk assessment
- @ref: 2007
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2007
- description: Thiobacillus thioparus strain Tk-m 16S ribosomal RNA gene, partial sequence
- accession: GU967681
- length: 1387
- database: nuccore
- NCBI tax ID: 931
External links
@ref: 2007
culture collection no.: DSM 5368
straininfo link
- @ref: 75633
- straininfo: 47927
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 2930168 | Removal of methanethiol, dimethyl sulfide, dimethyl disulfide, and hydrogen sulfide from contaminated air by Thiobacillus thioparus TK-m. | Kanagawa T, Mikami E | Appl Environ Microbiol | 10.1128/aem.55.3.555-558.1989 | 1989 | *Air Microbiology, Air Pollutants/*metabolism, Biodegradation, Environmental, Disulfides/metabolism, Hydrogen Sulfide/metabolism, *Odorants, Sulfhydryl Compounds/metabolism, Sulfides/metabolism, Thiobacillus/*metabolism | |
| Metabolism | 16921530 | Performance and microbial analysis of defined and non-defined inocula for the removal of dimethyl sulfide in a biotrickling filter. | Sercu B, Boon N, Beken SV, Verstraete W, Van Langenhove H | Biotechnol Bioeng | 10.1002/bit.21059 | 2007 | Air Pollutants/*metabolism, Biodegradation, Environmental, Biofilms, DNA Fingerprinting, Filtration/methods, Hyphomicrobium/*metabolism, Industrial Waste/prevention & control, Polymerase Chain Reaction/methods, Sewage/*microbiology, Sulfides/analysis/*metabolism, Thiobacillus/*metabolism | Biotechnology |
| Metabolism | 23530338 | Dimethyl sulfide biofiltration using immobilized Hyphomicrobium VS and Thiobacillus thioparus TK-m in sugarcane bagasse. | Treto Fernandez H, Rodriguez Rico I, Jover de la Prida J, Van Langenhove H | Environ Technol | 10.1080/09593330.2012.692713 | 2013 | Air Pollutants/isolation & purification/*metabolism, Air Pollution/prevention & control, Cells, Immobilized/*metabolism, Feasibility Studies, Hyphomicrobium/*metabolism, Saccharum/*microbiology, Sulfides/*metabolism, Thiobacillus/*metabolism | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2007 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5368) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5368 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 75633 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47927.1 | StrainInfo: A central database for resolving microbial strain identifiers |