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Strain identifier

BacDive ID: 6014

Type strain: Yes

Species: Halomonas halodenitrificans

Strain history: <- CCM <- N.E. Gibbons (Micrococcus halodenitrificans)

NCBI tax ID(s): 1121941 (strain), 28252 (species)

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General

@ref: 379

BacDive-ID: 6014

DSM-Number: 735

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Halomonas halodenitrificans DSM 735 is a mesophilic bacterium that was isolated from wiltshire bacon curing brine.

NCBI tax id

NCBI tax idMatching level
1121941strain
28252species

strain history: <- CCM <- N.E. Gibbons (Micrococcus halodenitrificans)

doi: 10.13145/bacdive6014.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas halodenitrificans
  • full scientific name: Halomonas halodenitrificans (Robinson and Gibbons 1952) Dobson and Franzmann 1996

  • synonyms

    @refsynonym
    20215Paracoccus halodenitrificans
    20215Micrococcus halodenitrificans

@ref: 379

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas halodenitrificans

full scientific name: Halomonas halodenitrificans (Robinson and Gibbons 1952) Dobson and Franzmann 1996

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
379MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)yeshttps://mediadive.dsmz.de/medium/514bName: MEDIUM 514 plus additional salt (DSMZ Medium 514b) Composition: NaCl 19.45 g/l Agar 17.5 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
39298MEDIUM 192 - for Alteromonas rubrayesDistilled water make up to (250.000 ml);Agar (15.000 g);Yeast extract (3.000 g);Peptone (5.000 g);Synthetic sea solution - M0216 (750.000 ml)

culture temp

@refgrowthtypetemperaturerange
379positivegrowth28mesophilic
39298positivegrowth25mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 379
  • sample type: wiltshire bacon curing brine
  • country: Canada
  • origin.country: CAN
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Meat
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_91581.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_37848;97_48132;98_63115;99_91581&stattab=map
  • Last taxonomy: Halomonas
  • 16S sequence: L04942
  • Sequence Identity:
  • Total samples: 46
  • soil counts: 8
  • aquatic counts: 19
  • animal counts: 12
  • plant counts: 7

Safety information

risk assessment

  • @ref: 379
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 379
  • description: Paracoccus halodenitrificans 16S ribosomal RNA sequence
  • accession: L04942
  • length: 1531
  • database: ena
  • NCBI tax ID: 28252

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halomonas halodenitrificans DSM 735 DSM 735GCA_000620045scaffoldncbi1121941
66792Halomonas halodenitrificans DSM 7351121941.3wgspatric1121941
66792Halomonas halodenitrificans DSM 7352556921012draftimg1121941
66792Mycobacteroides abscessus PAP103GCA_001216225scaffoldpatric36809

GC content

  • @ref: 379
  • GC-content: 65.0

External links

@ref: 379

culture collection no.: DSM 735, ATCC 13511, CCM 286, NCMB 700

straininfo link

@refpassport
20218http://www.straininfo.net/strains/96978
20218http://www.straininfo.net/strains/96977
20218http://www.straininfo.net/strains/96979
20218http://www.straininfo.net/strains/96980

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism12615395Thermokinetic description of anaerobic growth of Halomonas halodenitrificans using a static microcalorimetric ampoule technique.Maskow T, Babel WJ Biotechnol10.1016/s0168-1656(02)00341-32003Anaerobiosis, Calorimetry/instrumentation/*methods, Computer Simulation, Glycerol/metabolism, Halomonas/*growth & development, *Models, Biological, Nitrates/metabolism, Reproducibility of Results, Sensitivity and Specificity, Statistics as Topic
Metabolism16309773Chip calorimetry for the monitoring of whole cell biotransformation.Maskow T, Lerchner J, Peitzsch M, Harms H, Wolf GJ Biotechnol10.1016/j.jbiotec.2005.10.0082005Anaerobiosis, *Biotransformation, Calorimetry/instrumentation/*methods, Cells, Cultured, Escherichia coli/growth & development/metabolism, Halomonas/growth & development/metabolism, Hot Temperature, Kinetics, Models, Biological, Thermodynamics, Time FactorsStress
Phylogeny33351740Halomonas icarae sp. nov., a moderately halophilic bacterium isolated from beach soil in India.Pandiyan K, Kushwaha P, Bagul SY, Chakdar H, Madhaiyan M, Krishnamurthi S, Kumar P, Karthikeyan N, Singh A, Kumar M, Singh UB, Saxena AKInt J Syst Evol Microbiol10.1099/ijsem.0.0046112020Bacterial Typing Techniques, Base Composition, Bathing Beaches, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Halomonas/*classification/isolation & purification, India, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
379Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 735)https://www.dsmz.de/collection/catalogue/details/culture/DSM-735
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39298Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17477
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta