Strain identifier
BacDive ID: 5987
Type strain: 
Species: Natroniella acetigena
Strain Designation: Z-7937
Strain history: <- T. N. Zhilina, Z-7937
NCBI tax ID(s): 52004 (species)
version 9.1 (current version)
General
@ref: 3763
BacDive-ID: 5987
DSM-Number: 9952
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative
description: Natroniella acetigena Z-7937 is an anaerobe, Gram-negative bacterium that was isolated from bottom mud from Lake Magadi.
NCBI tax id
- NCBI tax id: 52004
- Matching level: species
strain history
- @ref: 3763
- history: <- T. N. Zhilina, Z-7937
doi: 10.13145/bacdive5987.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Halanaerobiales
- family: Halobacteroidaceae
- genus: Natroniella
- species: Natroniella acetigena
- full scientific name: Natroniella acetigena Zhilina et al. 1996
@ref: 3763
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Halanaerobiales
family: Halobacteroidaceae
genus: Natroniella
species: Natroniella acetigena
full scientific name: Natroniella acetigena Zhilina et al. 1996
strain designation: Z-7937
type strain: yes
Culture and growth conditions
culture medium
- @ref: 3763
- name: NATRONIELLA MEDIUM (DSMZ Medium 784)
- growth: yes
- link: https://mediadive.dsmz.de/medium/784
- composition: Name: NATRONIELLA MEDIUM (DSMZ Medium 784) Composition: Na2CO3 67.5273 g/l NaHCO3 37.7358 g/l NaCl 15.8888 g/l Na2S x 9 H2O 0.993049 g/l NH4Cl 0.993049 g/l KCl 0.19861 g/l Yeast extract 0.19861 g/l KH2PO4 0.19861 g/l MgCl2 x 6 H2O 0.0993049 g/l Na2-EDTA x 2 H2O 0.00516385 g/l FeCl2 x 4 H2O 0.00148957 g/l Sodium resazurin 0.000496524 g/l CoCl2 x 6 H2O 0.000188679 g/l Pyridoxine hydrochloride 9.93049e-05 g/l MnCl2 x 4 H2O 9.93049e-05 g/l ZnCl2 6.95134e-05 g/l p-Aminobenzoic acid 4.96524e-05 g/l (DL)-alpha-Lipoic acid 4.96524e-05 g/l Thiamine HCl 4.96524e-05 g/l Riboflavin 4.96524e-05 g/l Nicotinic acid 4.96524e-05 g/l Calcium D-(+)-pantothenate 4.96524e-05 g/l Na2MoO4 x 2 H2O 3.57498e-05 g/l NiCl2 x 6 H2O 2.38332e-05 g/l Biotin 1.9861e-05 g/l Folic acid 1.9861e-05 g/l H3BO3 5.95829e-06 g/l CuCl2 x 2 H2O 1.9861e-06 g/l Vitamin B12 9.93049e-07 g/l Ethanol absolute Distilled water
culture temp
- @ref: 3763
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 3763
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 3763
- sample type: bottom mud from Lake Magadi
- geographic location: Lake Magadi
- country: Kenya
- origin.country: KEN
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Mud (Sludge) |
taxonmaps
- @ref: 69479
- File name: preview.99_41893.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4136;96_19402;97_24077;98_30456;99_41893&stattab=map
- Last taxonomy: Natroniella acetigena subclade
- 16S sequence: X95817
- Sequence Identity:
- Total samples: 53
- soil counts: 3
- aquatic counts: 8
- animal counts: 27
- plant counts: 15
Safety information
risk assessment
- @ref: 3763
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Natroniella acetigena partial 16S rRNA gene, type strain DSM 9952T | FR749904 | 1511 | nuccore | 52004 |
| 20218 | N.acetigena 16S rRNA gene | X95817 | 1461 | nuccore | 52004 |
Genome sequences
- @ref: 66792
- description: Natroniella acetigena Z-7937
- accession: GCA_023227745
- assembly level: contig
- database: ncbi
- NCBI tax ID: 52004
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 76.386 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 80.541 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 91.098 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 57.835 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 82.378 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 70.874 | no |
External links
@ref: 3763
culture collection no.: DSM 9952
straininfo link
- @ref: 75476
- straininfo: 48722
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year |
|---|---|---|---|---|---|---|
| Phylogeny | 8661677 | Natroniella acetigena gen. nov. sp. nov., an Extremely Haloalkaliphilic, Homoacetic Bacterium: A New Member of Haloanaerobiales | Zhilina TN, Zavarzin GA, Detkova EN, Rainey FA | Curr Microbiol | 10.1007/s002849900057 | 1996 |
| Genetics | 35950870 | Draft Genome Sequence of the Extremely Haloalkaliphilic and Homoacetic Bacterium Natroniella acetigena Z-7937(T). | Huang Y, Nobu MK, Igarashi K, Kato S | Microbiol Resour Announc | 10.1128/mra.00472-22 | 2022 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3763 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9952) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9952 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 75476 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48722.1 | StrainInfo: A central database for resolving microbial strain identifiers |