Strain identifier
BacDive ID: 5967
Type strain: 
Species: Natronococcus jeotgali
Strain Designation: B1
Strain history: <- S.W.ROH,KRIBB
NCBI tax ID(s): 1227498 (strain), 413812 (species)
version 8.1 (current version)
General
@ref: 7701
BacDive-ID: 5967
DSM-Number: 18795
keywords: genome sequence, 16S sequence, Archaea, aerobe, mesophilic
description: Natronococcus jeotgali B1 is an aerobe, mesophilic archaeon that was isolated from salted shrimp jeotgal .
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 413812 | species |
| 1227498 | strain |
strain history
| @ref | history |
|---|---|
| 7701 | <- S. W. Roh, Korea Res. Inst. of Biosci. and Biotechnol. (KRIBB); B1 |
| 67770 | S. W. Roh B1. |
| 67771 | <- S.W.ROH,KRIBB |
doi: 10.13145/bacdive5967.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Natrialbales
- family: Natrialbaceae
- genus: Natronococcus
- species: Natronococcus jeotgali
- full scientific name: Natronococcus jeotgali Roh et al. 2007
@ref: 7701
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Natrialbaceae
genus: Natronococcus
species: Natronococcus jeotgali
full scientific name: Natronococcus jeotgali Roh et al. 2007
strain designation: B1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7701
- name: MEDIUM FOR H. DOMBROWSKII (DSMZ Medium 954)
- growth: yes
- link: https://mediadive.dsmz.de/medium/954
- composition: Name: MEDIUM FOR H. DOMBROWSKII (DSMZ Medium 954) Composition: NaCl 200.0 g/l MgCl2 x 6 H2O 20.0 g/l Agar 20.0 g/l Tris 12.1 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l KCl 2.0 g/l CaCl2 x 2 H2O 0.2 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7701 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
| 67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 7701 | salted shrimp jeotgal (traditional fermented food in Korea) | Republic of Korea | KOR | Asia |
| 67770 | Shrimp jeotgal, traditional Korean fermented seafood | Republic of Korea | KOR | Asia |
| 67771 | From jeotgal | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Seafood |
| #Host | #Arthropoda | #Crustacea |
| #Condition | #Saline | |
| #Engineered | #Food production | #Fermented |
taxonmaps
- @ref: 69479
- File name: preview.99_191500.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_68871;97_89929;98_124825;99_191500&stattab=map
- Last taxonomy: Natronococcus
- 16S sequence: AB663469
- Sequence Identity:
- Total samples: 18
- soil counts: 3
- aquatic counts: 15
Safety information
risk assessment
- @ref: 7701
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Natronococcus jeotgali gene for 16S ribosomal RNA, partial sequence, strain: JCM 14583 | AB477232 | 1433 | ena | 413812 |
| 20218 | Natronococcus jeotgali gene for 16S rRNA, complete sequence, strain: JCM 14583 | AB663469 | 1473 | ena | 413812 |
| 7701 | Natronococcus jeotgali strain B1 16S ribosomal RNA gene, partial sequence | EF077631 | 1318 | ena | 413812 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Natronococcus jeotgali DSM 18795 | 2554235493 | draft | img | 1227498 |
| 67770 | Natronococcus jeotgali DSM 18795 | GCA_000337695 | contig | ncbi | 1227498 |
| 66792 | Natronococcus jeotgali DSM 18795 | 1227498.3 | wgs | patric | 1227498 |
External links
@ref: 7701
culture collection no.: DSM 18795, CECT 7216, JCM 14583, KCTC 4018, CGMCC 1.7070, NBRC 110680
straininfo link
- @ref: 75456
- straininfo: 309547
literature
- topic: Phylogeny
- Pubmed-ID: 17766885
- title: Natronococcus jeotgali sp. nov., a halophilic archaeon isolated from shrimp jeotgal, a traditional fermented seafood from Korea.
- authors: Roh SW, Nam YD, Chang HW, Sung Y, Kim KH, Lee HJ, Oh HM, Bae JW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65120-0
- year: 2007
- mesh: Animals, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Natronococcus/*classification/genetics/*isolation & purification/physiology, Nucleic Acid Hybridization, Pandalidae/*microbiology, Phylogeny, Pigments, Biological/biosynthesis, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Shellfish/*microbiology, Temperature
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7701 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18795) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18795 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 75456 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID309547.1 | StrainInfo: A central database for resolving microbial strain identifiers |