Strain identifier

BacDive ID: 5906

Type strain: Yes

Species: Haloarcula argentinensis

Strain Designation: arg-1

Strain history: CIP <- 1997, K. Ihara, Nagoya Univ., Japan: strain arg-1 <- Y. Mukohata

NCBI tax ID(s): 1230451 (strain), 43776 (species)

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General

@ref: 4671

BacDive-ID: 5906

DSM-Number: 12282

keywords: genome sequence, 16S sequence, Archaea, mesophilic, Gram-negative, motile, rod-shaped

description: Haloarcula argentinensis arg-1 is a mesophilic, Gram-negative, motile archaeon that was isolated from salinas chica.

NCBI tax id

NCBI tax idMatching level
1230451strain
43776species

strain history

@refhistory
4671<- JCM <- K. Ihara, arg-1
67770K. Ihara arg-1.
116491CIP <- 1997, K. Ihara, Nagoya Univ., Japan: strain arg-1 <- Y. Mukohata

doi: 10.13145/bacdive5906.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Halobacteriales
  • family: Haloarculaceae
  • genus: Haloarcula
  • species: Haloarcula argentinensis
  • full scientific name: Haloarcula argentinensis Ihara et al. 1997

@ref: 4671

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Haloarculaceae

genus: Haloarcula

species: Haloarcula argentinensis

full scientific name: Haloarcula argentinensis Ihara et al. 1997

strain designation: arg-1

type strain: yes

Morphology

cell morphology

  • @ref: 116491
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4671HALOBACTERIA MEDIUM (DSMZ Medium 372)yeshttps://mediadive.dsmz.de/medium/372Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
38537MEDIUM 198 - for HaloarculayesSodium hydrogen carbonate (0.200 g);Distilled water make up to (1000.000 ml);Sodium chloride (200.000 g);Potassium chloride (4.000 g);Magnesium chloride hexahydrate(13.000 g);Magnesium sulphate heptahydrate (20.000 g);Calcium chloride dihydrate (1.000 g);
116491CIP Medium 198yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=198

culture temp

@refgrowthtypetemperaturerange
4671positivegrowth37mesophilic
38537positivegrowth39mesophilic
67770positivegrowth37mesophilic
116491positivegrowth37-41
116491nogrowth5psychrophilic
116491nogrowth15psychrophilic
116491nogrowth22psychrophilic
116491nogrowth30mesophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
116491NaClnogrowth0 %
116491NaClnogrowth2 %
116491NaClnogrowth4 %
116491NaClnogrowth6 %
116491NaClnogrowth8 %
116491NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371D-mannose-builds acid from16024
68371D-glucose-builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
116491citrate-carbon source16947
116491esculin-hydrolysis4853
116491nitrate-reduction17632
116491nitrite-reduction16301

antibiotic resistance

  • @ref: 116491
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 116491
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11649115688acetoin-
11649117234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
116491oxidase+
116491alcohol dehydrogenase-1.1.1.1
116491gelatinase-
116491catalase+1.11.1.6
116491tween esterase-
116491gamma-glutamyltransferase-2.3.2.2
116491lysine decarboxylase-4.1.1.18
116491ornithine decarboxylase-4.1.1.17
116491phenylalanine ammonia-lyase-4.3.1.24
116491tryptophan deaminase-
116491urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116491-+-+----------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116491----+/-----+/--+/--+/--------------------------+/-+/---------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
4671salinas chicaChubut, Peninsula VardezArgentinaARGMiddle and South America
67770Salinas Chica in the Peninsula VardezChubutArgentinaARGMiddle and South America
116491Environment, Soil, salt flatsValdes Peninsula, ChubutArgentinaARGMiddle and South America

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
46711Risk group (German classification)
1164911Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Haloarcula argentinensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 9737AB3559831472ena1230451
20218Haloarcula argentinensis gene for 16S rRNA, complete sequence, strain: JCM 9737AB6633511472ena1230451
20218Haloarcula argentinensis strain JCM9737 16S ribosomal RNA (rrnA) gene, complete sequenceEF6456801472ena1230451
20218Haloarcula argentinensis strain JCM9737 16S ribosomal RNA (rrnB) gene, complete sequenceEF6456811472ena1230451
4671Haloarcula argentinensis DNA for 16S rRNAD508491467ena43776

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haloarcula argentinensis DSM 122822554235479draftimg1230451
67770Haloarcula argentinensis DSM 12282GCA_000336895contigncbi1230451
66792Haloarcula argentinensis DSM 122821230451.3wgspatric1230451

GC content

  • @ref: 67770
  • GC-content: 62
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 4671

culture collection no.: DSM 12282, JCM 9737, ATCC 700875, CGMCC 1.4296, CGMCC 1.6166, CIP 105173, NCIMB 13542

straininfo link

  • @ref: 75387
  • straininfo: 46260

literature

  • topic: Phylogeny
  • Pubmed-ID: 8995805
  • title: Haloarcula argentinensis sp. nov. and Haloarcula mukohataei sp. nov., two new extremely halophilic archaea collected in Argentina.
  • authors: Ihara K, Watanabe S, Tamura T
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-47-1-73
  • year: 1997
  • mesh: Argentina, Bacteriological Techniques, Base Composition, Culture Media/metabolism, DNA, Bacterial/*analysis, Glycolipids/analysis, Halobacteriaceae/*classification/*genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/*genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4671Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12282)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12282
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38537Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17163
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
75387Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46260.1StrainInfo: A central database for resolving microbial strain identifiers
116491Curators of the CIPCollection of Institut Pasteur (CIP 105173)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105173