Name: Haloarcula argentinensis arg-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5906

Type strain:

Species: Haloarcula argentinensis

Strain Designation: arg-1

Culture col. no.: DSM 12282, JCM 9737, ATCC 700875, CGMCC 1.4296, CGMCC 1.6166, CIP 105173, NCIMB 13542

Strain history: CIP <- 1997, K. Ihara, Nagoya Univ., Japan: strain arg-1 <- Y. Mukohata

NCBI tax ID(s): 1230451 (strain), 43776 (species)

SI-ID 46260

DSM 12282, JCM 9737, NCIMB 13542, CIP 105173, ATCC 700875

Special Collections

Section

Haloarcula argentinensis arg-1 is a Gram-negative, motile, rod-shaped archaeon that was isolated from salinas chica.

Gram-negative
motile
rod-shaped
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloarculaceae*
	Genus	*Haloarcula*
	Species	**Haloarcula argentinensis**
	Full Scientific Name (LPSN)	Haloarcula argentinensis Ihara et al. 1997

Information on morphological and physiological properties Morphology

[Ref.: #116491]	Gram stain	negative

[Ref.: #116491]	Cell shape	rod-shaped

[Ref.: #116491]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4671]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #4671]

Culture medium growth

[Ref.: #4671]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4671]

Culture medium composition

expand / minimize

[Ref.: #38537]

Culture medium

MEDIUM 198 - for Haloarcula

[Ref.: #38537]

Culture medium growth

[Ref.: #38537]

Culture medium composition

expand / minimize

[Ref.: #116491]

Culture medium

CIP Medium 198

[Ref.: #116491]

Culture medium growth

[Ref.: #116491]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4671]		growth	37 °C
[Ref.: #38537]		growth	39 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #116491]		growth	37-41 °C
[Ref.: #116491]	no	growth	5 °C
[Ref.: #116491]	no	growth	15 °C
[Ref.: #116491]	no	growth	22 °C
[Ref.: #116491]	no	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #116491]	NaCl	no	growth	0	%
[Ref.: #116491]	NaCl	no	growth	2	%
[Ref.: #116491]	NaCl	no	growth	4	%
[Ref.: #116491]	NaCl	no	growth	6	%
[Ref.: #116491]	NaCl	no	growth	8	%
[Ref.: #116491]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116491]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116491]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116491]	nitrate ChEBI	-	reduction
[Ref.: #116491]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116491]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #116491]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116491]		acetoin ChEBI	-
[Ref.: #116491]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #116491]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116491]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116491]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #116491]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116491]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #116491]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116491]	oxidase	+
[Ref.: #116491]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116491]	tryptophan deaminase	-
[Ref.: #116491]	tween esterase	-
[Ref.: #116491]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #116491]	9970	not determinedn.d.	-	-	-	-	+/-	-	-	-	-	+/-	-	+/-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116491]	8506	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4671]	Sample type/isolated from	salinas chica
[Ref.: #4671]	Geographic location (country and/or sea, region)	Chubut, Peninsula Vardez
[Ref.: #4671]	Country	Argentina
[Ref.: #4671]	Country ISO 3 Code	ARG
[Ref.: #4671]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Salinas Chica in the Peninsula Vardez
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chubut
[Ref.: #67770]	Country	Argentina
[Ref.: #67770]	Country ISO 3 Code	ARG
[Ref.: #67770]	Continent	Middle and South America

[Ref.: #116491]	Sample type/isolated from	Environment, Soil, salt flats
[Ref.: #116491]	Geographic location (country and/or sea, region)	Valdes Peninsula, Chubut
[Ref.: #116491]	Country	Argentina
[Ref.: #116491]	Country ISO 3 Code	ARG
[Ref.: #116491]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4671]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116491]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4671]	Haloarcula argentinensis DNA for 16S rRNA	D50849	1467	GenBank ENA	43776 tax ID
[Ref.: #20218]	Haloarcula argentinensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 9737	AB355983	1472	GenBank ENA	1230451 tax ID	*
[Ref.: #124043]	Haloarcula argentinensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 9737.	LC198789	1405	GenBank ENA	1230451 tax ID	*
[Ref.: #124043]	Haloarcula argentinensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 9737.	LC198790	1405	GenBank ENA	1230451 tax ID	*
[Ref.: #20218]	Haloarcula argentinensis strain JCM9737 16S ribosomal RNA (rrnA) gene, complete sequence	EF645680	1472	GenBank ENA	1230451 tax ID	*
[Ref.: #20218]	Haloarcula argentinensis strain JCM9737 16S ribosomal RNA (rrnB) gene, complete sequence	EF645681	1472	GenBank ENA	1230451 tax ID	*
[Ref.: #20218]	Haloarcula argentinensis gene for 16S rRNA, complete sequence, strain: JCM 9737	AB663351	1472	GenBank ENA	1230451 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloarcula argentinensis DSM 12282	GCA_000336895	contig	GenBank ENA	1230451 tax ID
[Ref.: #66792]	Haloarcula argentinensis DSM 12282	2554235479	draft	JGI IMG/M	1230451 tax ID	*
[Ref.: #66792]	Haloarcula argentinensis DSM 12282	1230451.3	wgs	PATRIC	1230451 tax ID	*

[Ref.: #67770]

GC-content

62 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #4671]

Culture collection no.

DSM 12282, JCM 9737, ATCC 700875, CGMCC 1.4296, CGMCC 1.6166, CIP 105173, NCIMB 13542

[Ref.: #75387]

SI-ID 46260

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloarcula argentinensis sp. nov. and Haloarcula mukohataei sp. nov., two new extremely halophilic archaea collected in Argentina.	Ihara K, Watanabe S, Tamura T	Int J Syst Bacteriol	10.1099/00207713-47-1-73	1997	*

References

#4671

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12282

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38537 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#75387

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46260.1 )

#116491 Collection of Institut Pasteur ; Curators of the CIP; CIP 105173

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

Change proposal

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