Strain identifier
BacDive ID: 5884
Type strain: 
Species: Natrinema thermotolerans
Strain Designation: PR5
Strain history: DSM 11552 <-- R. Montalvo-Rodríguez PR5.
NCBI tax ID(s): 121872 (species)
version 8.1 (current version)
General
@ref: 4414
BacDive-ID: 5884
DSM-Number: 11552
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Natrinema thermotolerans PR5 is a mesophilic archaeon that was isolated from solar salterns.
NCBI tax id
- NCBI tax id: 121872
- Matching level: species
strain history
| @ref | history |
|---|---|
| 4414 | <- R. Montalvo-Rodríguez; PR5 |
| 67770 | DSM 11552 <-- R. Montalvo-Rodríguez PR5. |
doi: 10.13145/bacdive5884.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Natrialbales
- family: Natrialbaceae
- genus: Natrinema
- species: Natrinema thermotolerans
- full scientific name: Natrinema thermotolerans (Montalvo-Rodríguez et al. 2000) de la Haba et al. 2022
synonyms
@ref synonym 20215 Haloterrigena jeotgali 20215 Haloterrigena thermotolerans
@ref: 4414
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Natrialbaceae
genus: Haloterrigena
species: Haloterrigena thermotolerans
full scientific name: Haloterrigena thermotolerans Montalvo-Rodríguez et al. 2000
strain designation: PR5
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4414
- name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
- growth: yes
- link: https://mediadive.dsmz.de/medium/372
- composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 4414 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 4414 | solar salterns | Cabor Rojo | Puerto Rico | PRI | Middle and South America |
| 67770 | Saltern crystallizer pond | Cabo Rojo | Puerto Rico | PRI | North America |
isolation source categories
- Cat1: #Condition
- Cat2: #Saline
taxonmaps
- @ref: 69479
- File name: preview.99_187221.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_68845;97_89490;98_121770;99_187221&stattab=map
- Last taxonomy: Natrialbaceae
- 16S sequence: AB663449
- Sequence Identity:
- Total samples: 12
- soil counts: 6
- aquatic counts: 5
- animal counts: 1
Safety information
risk assessment
- @ref: 4414
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Haloterrigena thermotolerans gene for 16S rRNA, complete sequence, strain: JCM 11050 | AB663449 | 1473 | ena | 121872 |
| 4414 | Haloterrigena thermotolerans 16S ribosomal RNA gene, partial sequence | AF115478 | 1451 | ena | 121872 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Haloterrigena thermotolerans DSM 11552 | 2534681901 | draft | img | 1227489 |
| 67770 | Haloterrigena thermotolerans DSM 11552 DSM 11552 | GCA_000337115 | contig | ncbi | 1227489 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 4414 | 63.3 | |
| 67770 | 63.3 | high performance liquid chromatography (HPLC) |
External links
@ref: 4414
culture collection no.: DSM 11552, ATCC 700275, JCM 11050, CGMCC 1.3709, CGMCC 1.3841, CGMCC 1.5399, NBRC 102635
straininfo link
| @ref | straininfo |
|---|---|
| 75363 | 43859 |
| 75364 | 318325 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 10843046 | Haloterrigena thermotolerans sp. nov., a halophilic archaeon from Puerto Rico. | Montalvo-Rodriguez R, Lopez-Garriga J, Vreeland RH, Oren A, Ventosa A, Kamekura M | Int J Syst Evol Microbiol | 10.1099/00207713-50-3-1065 | 2000 | Base Composition, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Halobacteriales/*classification/genetics/growth & development/metabolism, Lipids/analysis, Molecular Sequence Data, Phenotype, Phylogeny, Polymerase Chain Reaction, Puerto Rico, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, *Water Microbiology | Genetics |
| Phylogeny | 16280523 | Haloterrigena saccharevitans sp. nov., an extremely halophilic archaeon from Xin-Jiang, China. | Xu XW, Liu SJ, Tohty D, Oren A, Wu M, Zhou PJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.63761-0 | 2005 | Base Composition, China, DNA, Archaeal/analysis/chemistry/genetics, DNA, Ribosomal/analysis/chemistry/genetics, Halobacteriales/*classification/genetics/growth & development/metabolism, Lipids/analysis, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, *Water Microbiology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4414 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11552) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11552 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 75363 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID43859.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 75364 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID318325.1 | StrainInfo: A central database for resolving microbial strain identifiers |