Strain identifier
BacDive ID: 5767
Type strain: 
Species: Fusobacterium canifelinum
Strain history: <- G. Conrads; RMA 12701 <- RM Alden Res. Lab., Los Angeles <- S. Jang
NCBI tax ID(s): 285729 (species)
version 9.1 (current version)
General
@ref: 5992
BacDive-ID: 5767
DSM-Number: 15543
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative
description: Fusobacterium canifelinum DSM 15543 is an anaerobe, Gram-negative bacterium that was isolated from cat, from bronchus.
NCBI tax id
- NCBI tax id: 285729
- Matching level: species
strain history
- @ref: 5992
- history: <- G. Conrads; RMA 12701 <- RM Alden Res. Lab., Los Angeles <- S. Jang
doi: 10.13145/bacdive5767.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/fusobacteriota
- domain: Bacteria
- phylum: Fusobacteriota
- class: Fusobacteriia
- order: Fusobacteriales
- family: Fusobacteriaceae
- genus: Fusobacterium
- species: Fusobacterium canifelinum
- full scientific name: Fusobacterium canifelinum corrig. Conrads et al. 2004
synonyms
- @ref: 20215
- synonym: Fusobacterium canium
@ref: 5992
domain: Bacteria
phylum: Fusobacteria
class: Fusobacteriia
order: Fusobacteriales
family: Fusobacteriaceae
genus: Fusobacterium
species: Fusobacterium canifelinum
full scientific name: Fusobacterium canifelinum Conrads et al. 2004
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5992 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
| 5992 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 5992
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 5992 | anaerobe | |
| 69480 | anaerobe | 91.891 |
Isolation, sampling and environmental information
isolation
- @ref: 5992
- sample type: cat, from bronchus
- geographic location: California
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Felidae (Cat) |
| #Host Body-Site | #Oral cavity and airways | #Lung |
taxonmaps
- @ref: 69479
- File name: preview.99_712.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_140;96_436;97_498;98_572;99_712&stattab=map
- Last taxonomy: Fusobacterium
- 16S sequence: AY162219
- Sequence Identity:
- Total samples: 12265
- soil counts: 65
- aquatic counts: 197
- animal counts: 11939
- plant counts: 64
Safety information
risk assessment
- @ref: 5992
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5992
- description: Fusobacterium canifelinum strain RMA 12701 16S ribosomal RNA gene, partial sequence
- accession: AY162219
- length: 1458
- database: nuccore
- NCBI tax ID: 285729
Genome sequences
- @ref: 66792
- description: Fusobacterium canifelinum strain FDAARGOS_999
- accession: 285729.6
- assembly level: complete
- database: patric
- NCBI tax ID: 285729
GC content
- @ref: 5992
- GC-content: 26
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 88.408 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 91.891 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 79.847 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 97.532 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 92.264 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 84 | no |
External links
@ref: 5992
culture collection no.: DSM 15543, ATCC BAA-690, RMA 12701
straininfo link
- @ref: 75246
- straininfo: 201713
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5992 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15543) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15543 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 75246 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID201713.1 | StrainInfo: A central database for resolving microbial strain identifiers |