Strain identifier

BacDive ID: 5741

Type strain: Yes

Species: Chryseobacterium buanense

Strain Designation: HM0024

Variant: Isotype of BacDive ID 5742

Strain history: <- KS Joh, Hankuk Univ. of Foreign Studies, Korea

NCBI tax ID(s): 619805 (species)

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General

@ref: 16280

BacDive-ID: 5741

DSM-Number: 22323

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Chryseobacterium buanense HM0024 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from coastal sea water.

NCBI tax id

  • NCBI tax id: 619805
  • Matching level: species

strain history

@refhistory
16280<- Y. C. Joung, Dept. Biosci. and Biotechnology, Hankuk Univ. of Foreign Studies, Yongin, Republic of Korea; HM0024
67771<- KS Joh, Hankuk Univ. of Foreign Studies, Korea

doi: 10.13145/bacdive5741.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium buanense
  • full scientific name: Chryseobacterium buanense (Joung et al. 2010) García-López et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Soonwooa buanensis

@ref: 16280

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium buanense

full scientific name: Chryseobacterium buanense (Joung et al. 2010) García-López et al. 2020

strain designation: HM0024

variant: Isotype of BacDive ID 5742

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29642negative1.8 µm0.6 µmrod-shapedno
67771negative
69480negative99.995

pigmentation

  • @ref: 29642
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16280
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16280positivegrowth28mesophilic
29642positivegrowth15-30
29642positiveoptimum30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
29642positivegrowth06-08
29642positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29642aerobe
67771aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.984

halophily

@refsaltgrowthtested relationconcentration
29642NaClpositivegrowth0-1.5 %
29642NaClpositiveoptimum0.75 %

observation

  • @ref: 29642
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2964222599arabinose+carbon source
2964218403L-arabitol+carbon source
2964233984fucose+carbon source
2964217716lactose+carbon source
2964230911sorbitol+carbon source

enzymes

@refvalueactivityec
29642catalase+1.11.1.6
29642cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16280coastal sea waterBuan beach of the Yellow SeaRepublic of KoreaKORAsia
67771From seawaterByeonsanRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Coast

Safety information

risk assessment

  • @ref: 16280
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16280
  • description: Flavobacteriaceae bacterium HM0024 16S ribosomal RNA gene, partial sequence
  • accession: FJ713810
  • length: 1449
  • database: ena
  • NCBI tax ID: 619805

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Soonwooa buanensis DSM 22323GCA_900167905scaffoldncbi619805
66792Soonwooa buanensis strain DSM 22323619805.3wgspatric619805
66792Soonwooa buanensis DSM 223232595698221draftimg619805

GC content

@refGC-contentmethod
1628029.6high performance liquid chromatography (HPLC)
2964229.6
1628034.4high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.118yes
flagellatedno96.108no
gram-positiveno98.588no
anaerobicno98.986yes
aerobicyes87.421no
halophileno95.11yes
spore-formingno94.272no
thermophileno99.022yes
glucose-utilyes81.777no
glucose-fermentno92.987no

External links

@ref: 16280

culture collection no.: DSM 22323, CECT 7503, KCTC 22689

straininfo link

  • @ref: 75221
  • straininfo: 370651

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19819990Soonwooa buanensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater.Joung Y, Song J, Lee K, Oh HM, Joh K, Cho JCInt J Syst Evol Microbiol10.1099/ijs.0.017707-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Flavobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyMetabolism
Phylogeny29058660Soonwooa purpurea sp. nov., isolated from a fresh water river.Sirra MRS, Padakandla SR, Chae JCInt J Syst Evol Microbiol10.1099/ijsem.0.0024412017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16280Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22323)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22323
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29642Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2603128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75221Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID370651.1StrainInfo: A central database for resolving microbial strain identifiers