Chryseobacterium buanense (DSM 22323, CECT 7503, KCTC 22689)

Name: Chryseobacterium buanense (DSM 22323, CECT 7503, KCTC 22689)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5741

Type strain

Strain Designation HM0024

Variant Isotype of BacDive ID 5742

Culture col. no. DSM 22323 CECT 7503 KCTC 22689 HM0024

NCBI tax ID(s) 619805

Special Collections DSMZ KCTC Literature strains

History <- Y. C. Joung, Dept. Biosci. and Biotechnology, Hankuk Univ. of Foreign Studies, Yongin, Republic of Korea; HM0024 <- KS Joh, Hankuk Univ. of Foreign Studies, Korea

Links

Chryseobacterium buanense HM0024 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from coastal sea water.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 370651

KCTC22689,CECT 7503,DSM 26167,DSM 22323

@ref 20215

Last LPSN update 2025-12-16 09:48:08

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium buanense

Full scientific name Chryseobacterium buanense (Joung et al. 2010) García-López et al. 2020

Synonyms (1)

Soonwooa buanensis

BacDive ID	Other strains from **Chryseobacterium buanense** (1)	Type strain
5742	C. buanense HM0024, DSM 26167, CECT 7503, KCTC 22689 (type strain)

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29642	negative	1.8 µm	0.6 µm	rod-shaped
67771	negative
125439	negative				99.9
125438	negative				99

Pigmentation

29642

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16280	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16280	positive	growth	28	mesophilic
29642	positive	growth	15-30
29642	positive	optimum	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
29642	positive	optimum	7
29642	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29642	aerobe
67771	aerobe
125439	obligate aerobe	98.5

Spore formation

@ref	Spore formation	Confidence
125439		99.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29642	NaCl	positive	growth	0-1.5 %
29642	NaCl	positive	optimum	0.75 %

Observation

29642

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29642	22599 ChEBI	arabinose	+	carbon source
29642	33984 ChEBI	fucose	+	carbon source
29642	18403 ChEBI	L-arabitol	+	carbon source
29642	17716 ChEBI	lactose	+	carbon source
29642	30911 ChEBI	sorbitol	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29642	catalase	+	1.11.1.6
29642	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	enterobactin biosynthesis	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	kanosamine biosynthesis II	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	starch degradation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	citric acid cycle	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	vitamin B1 metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	propionate fermentation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	vitamin K metabolism	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	glycogen biosynthesis	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	CMP-KDO biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	cysteine metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	threonine metabolism	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	phenylalanine metabolism	69.23	9 of 13
66794	purine metabolism	69.15	65 of 94
66794	pyrimidine metabolism	68.89	31 of 45
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	d-mannose degradation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	tyrosine metabolism	64.29	9 of 14
66794	vitamin B6 metabolism	63.64	7 of 11
66794	pentose phosphate pathway	63.64	7 of 11
66794	tryptophan metabolism	63.16	24 of 38
66794	ketogluconate metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	alanine metabolism	62.07	18 of 29
66794	non-pathway related	60.53	23 of 38
66794	arachidonate biosynthesis	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	glycolysis	58.82	10 of 17
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	glutathione metabolism	57.14	8 of 14
66794	lipid metabolism	54.84	17 of 31
66794	leucine metabolism	53.85	7 of 13
66794	isoleucine metabolism	50	4 of 8
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	ethanol fermentation	50	1 of 2
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	sulfate reduction	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	proline metabolism	45.45	5 of 11
66794	Entner Doudoroff pathway	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	3-phenylpropionate degradation	40	6 of 15
66794	oxidative phosphorylation	39.56	36 of 91
66794	urea cycle	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	carnitine metabolism	37.5	3 of 8
66794	carotenoid biosynthesis	36.36	8 of 22
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	cyanate degradation	33.33	1 of 3
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	valine metabolism	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	vitamin B12 metabolism	32.35	11 of 34
66794	mevalonate metabolism	28.57	2 of 7
66794	d-xylose degradation	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	metabolism of disaccharids	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	degradation of pentoses	25	7 of 28
66794	butanoate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	polyamine pathway	21.74	5 of 23

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16280	coastal sea water	Buan beach of the Yellow Sea	Republic of Korea	KOR	Asia
67771	From seawater	Byeonsan	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16280	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2595698221 annotated assembly for Soonwooa buanensis DSM 22323	scaffold	GCA_900167905	619805.3	2595698221	619805	72.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16280	Flavobacteriaceae bacterium HM0024 16S ribosomal RNA gene, partial sequence	FJ713810	1449		619805

GC content

@ref	GC-content (mol%)	Method
16280	29.6	high performance liquid chromatography (HPLC)
29642	29.6
16280	34.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Soonwooa buanensis DSM 22323
NCBI: GCA_900167905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.50	no
125439	motility	BacteriaNetⓘ	no	68.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Soonwooa buanensis DSM 22323
NCBI: GCA_900167905.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	no	94.26	no
125438	aerobic	aerobicⓘ	yes	88.39	yes
125438	spore-forming	spore-formingⓘ	no	89.07	no
125438	thermophilic	thermophileⓘ	no	98.74	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Soonwooa purpurea sp. nov., isolated from a fresh water river.	Sirra MRS, Padakandla SR, Chae JC	Int J Syst Evol Microbiol	10.1099/ijsem.0.002441	2017
Phylogeny	Soonwooa buanensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater.	Joung Y, Song J, Lee K, Oh HM, Joh K, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.017707-0	2009

References

#16280	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22323
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26031	IJSEM 2061 2010 ( DOI 10.1099/ijs.0.017707-0 , PubMed 19819990 )
#29642	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26031
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium buanense (DSM 22323, CECT 7503, KCTC 22689)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900167905

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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