Strain identifier

BacDive ID: 5734

Type strain: Yes

Species: Salinimicrobium xinjiangense

Strain Designation: BH206

Strain history: <- CJ Kim, KRIBB

NCBI tax ID(s): 1123235 (strain), 438596 (species)

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General

@ref: 7998

BacDive-ID: 5734

DSM-Number: 19287

keywords: genome sequence, 16S sequence, Bacteria, facultative aerobe, mesophilic, Gram-negative, rod-shaped

description: Salinimicrobium xinjiangense BH206 is a facultative aerobe, mesophilic, Gram-negative bacterium that was isolated from salt lake.

NCBI tax id

NCBI tax idMatching level
438596species
1123235strain

strain history

@refhistory
7998<- C.-J. Kim, Korea Res. Inst. of Biosci. and Biotechnol. (KRIBB); BH206 <- J.-M. Lim
67771<- CJ Kim, KRIBB

doi: 10.13145/bacdive5734.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Salinimicrobium
  • species: Salinimicrobium xinjiangense
  • full scientific name: Salinimicrobium xinjiangense Lim et al. 2008

@ref: 7998

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Salinimicrobium

species: Salinimicrobium xinjiangense

full scientific name: Salinimicrobium xinjiangense Lim et al. 2008

strain designation: BH206

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32312negative1.8 µm0.8 µmrod-shapedno
67771negative
69480negative99.986

pigmentation

  • @ref: 32312
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 7998
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7998positivegrowth32mesophilic
32312positivegrowth10-48
32312positiveoptimum33.5mesophilic
67771positivegrowth32-35mesophilic

culture pH

@refabilitytypepHPH range
32312positivegrowth06-09alkaliphile
32312positiveoptimum7.75

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32312facultative aerobe
67771aerobe

spore formation

@refspore formationconfidence
32312no
69481no100
69480no99.99

halophily

@refsaltgrowthtested relationconcentration
32312NaClpositivegrowth0.5-10 %
32312NaClpositiveoptimum2.5 %

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3231228260galactose+carbon source
3231217234glucose+carbon source
3231217716lactose+carbon source
3231217306maltose+carbon source
3231237684mannose+carbon source
323124853esculin+hydrolysis

enzymes

@refvalueactivityec
32312acid phosphatase+3.1.3.2
32312alkaline phosphatase+3.1.3.1
32312catalase+1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7998salt lakeXinjiang provinceChinaCHNAsia
67771From soilXinjiangChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_128788.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_9395;97_52397;98_86284;99_128788&stattab=map
  • Last taxonomy: Salinimicrobium
  • 16S sequence: EF520007
  • Sequence Identity:
  • Total samples: 44
  • soil counts: 19
  • aquatic counts: 15
  • animal counts: 9
  • plant counts: 1

Safety information

risk assessment

  • @ref: 7998
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7998
  • description: Salinimicrobium xinjiangense strain BH206 16S ribosomal RNA gene, partial sequence
  • accession: EF520007
  • length: 1404
  • database: ena
  • NCBI tax ID: 438596

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salinimicrobium xinjiangense DSM 19287GCA_000423585scaffoldncbi1123235
66792Salinimicrobium xinjiangense DSM 192871123235.4wgspatric1123235
66792Salinimicrobium xinjiangense DSM 192872524023136draftimg1123235

GC content

  • @ref: 7998
  • GC-content: 42.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.134yes
flagellatedno95.122yes
gram-positiveno97.897yes
anaerobicno98.54yes
aerobicyes86.039no
halophileno50no
spore-formingno93.913no
thermophileno99.085no
glucose-utilyes88.608yes
glucose-fermentno88.072no

External links

@ref: 7998

culture collection no.: DSM 19287, KCTC 12883

straininfo link

  • @ref: 75214
  • straininfo: 404210

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18218946Reclassification of Salegentibacter catena Ying et al. 2007 as Salinimicrobium catena gen. nov., comb. nov. and description of Salinimicrobium xinjiangense sp. nov., a halophilic bacterium isolated from Xinjiang province in China.Lim JM, Jeon CO, Lee SS, Park DJ, Xu LH, Jiang CL, Kim CJInt J Syst Evol Microbiol10.1099/ijs.0.65297-02008Bacterial Typing Techniques, China, DNA, Bacterial/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Fresh Water/chemistry/*microbiology, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium ChlorideGenetics
Phylogeny18984683Salinimicrobium terrae sp. nov., isolated from saline soil, and emended description of the genus Salinimicrobium.Chen YG, Cui XL, Zhang YQ, Li WJ, Wang YX, Kim CJ, Lim JM, Xu LH, Jiang CLInt J Syst Evol Microbiol10.1099/ijs.0.65860-02008Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, *Soil Microbiology, Species SpecificityGenetics
Phylogeny24425818Salinimicrobium sediminis sp. nov., isolated from a deep-sea sediment.Subhash Y, Sasikala C, Ramana CVInt J Syst Evol Microbiol10.1099/ijs.0.058149-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Triterpenes/chemistry, Vitamin K 2/analogs & derivatives/chemistry, *Water MicrobiologyGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7998Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19287)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19287
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32312Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2854928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75214Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID404210.1StrainInfo: A central database for resolving microbial strain identifiers