Strain identifier

BacDive ID: 5712

Type strain: Yes

Species: Chryseobacterium piperi

Strain Designation: CTM

Strain history: <- Jeffrey D Newman, ycoming College, USA

NCBI tax ID(s): 558152 (species)

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General

@ref: 16231

BacDive-ID: 5712

DSM-Number: 22249

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Chryseobacterium piperi CTM is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sediment and water from a freshwater creek.

NCBI tax id

  • NCBI tax id: 558152
  • Matching level: species

strain history

@refhistory
16231<- J. D. Newman, Lycoming College, Williamsport, USA; CTM
67770J. D. Newman strain CTM.
67771<- Jeffrey D Newman, ycoming College, USA

doi: 10.13145/bacdive5712.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium piperi
  • full scientific name: Chryseobacterium piperi Strahan et al. 2011

@ref: 16231

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium piperi

full scientific name: Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016

strain designation: CTM

type strain: yes

Morphology

cell morphology

  • @ref: 67771
  • gram stain: negative

colony morphology

  • @ref: 61426
  • incubation period: 1 day

Culture and growth conditions

culture medium

  • @ref: 16231
  • name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/545
  • composition: Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16231positivegrowth28mesophilic
61426positivegrowth30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
61426aerobe
67771aerobe

observation

  • @ref: 67770
  • observation: quinones: MK-6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudesampling date
16231sediment and water from a freshwater creekPennsylvania, Forksville, Loyalsock Creek (41.488° N 76.600°W)USAUSANorth America41.488-76.6
61426Freshwater creekPennsylania,Loyalsock CreekUSAUSANorth America2006-01-01
67770Freshwater creek in North-central PennsylvaniaUSAUSANorth America
67771From sediment and water from a freshwater creekLoyalsock Creek (41.488° N 76.600°W), Montoursville, PennsylvaniaUSAUSANorth America41.488-76.6

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#River (Creek)
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_7020.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_206;97_3508;98_5156;99_7020&stattab=map
  • Last taxonomy: Chryseobacterium piperi
  • 16S sequence: EU999735
  • Sequence Identity:
  • Total samples: 71
  • soil counts: 7
  • aquatic counts: 33
  • animal counts: 27
  • plant counts: 4

Safety information

risk assessment

  • @ref: 16231
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16231
  • description: Chryseobacterium piperi strain CTM 16S ribosomal RNA gene, partial sequence
  • accession: EU999735
  • length: 1444
  • database: ena
  • NCBI tax ID: 558152

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium piperi CTM2619619246draftimg558152
67771Chryseobacterium piperi CTMGCA_000737775contigncbi558152

GC content

@refGC-contentmethod
1623138.6high performance liquid chromatography (HPLC)
1623135.2sequence analysis

External links

@ref: 16231

culture collection no.: DSM 22249, ATCC BAA 1782, CCUG 57707, JCM 15960, KCTC 23267

straininfo link

  • @ref: 75194
  • straininfo: 397194

literature

  • topic: Phylogeny
  • Pubmed-ID: 20889766
  • title: Chryseobacterium piperi sp. nov., isolated from a freshwater creek.
  • authors: Strahan BL, Failor KC, Batties AM, Hayes PS, Cicconi KM, Mason CT, Newman JD
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.027805-0
  • year: 2010
  • mesh: Bacterial Typing Techniques, Chryseobacterium/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Molecular Sequence Data, Pennsylvania, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16231Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22249)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22249
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
61426Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 57707)https://www.ccug.se/strain?id=57707
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75194Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397194.1StrainInfo: A central database for resolving microbial strain identifiers