Strain identifier
BacDive ID: 5464
Type strain: 
Species: Persicobacter diffluens
Strain Designation: B1
Strain history: NCIMB 1402 <-- R. A. Lewin B1 <-- Y. Freitas.
NCBI tax ID(s): 981 (species)
version 8.1 (current version)
General
@ref: 1442
BacDive-ID: 5464
DSM-Number: 3658
keywords: 16S sequence, Bacteria
description: Persicobacter diffluens B1 is a bacterium that was isolated from marine mud.
NCBI tax id
- NCBI tax id: 981
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1442 | <- H. Reichenbach <- NCMB <- R.A. Lewin, B1 <- Y. Freitas |
| 67770 | NCIMB 1402 <-- R. A. Lewin B1 <-- Y. Freitas. |
doi: 10.13145/bacdive5464.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Persicobacteraceae
- genus: Persicobacter
- species: Persicobacter diffluens
- full scientific name: Persicobacter diffluens (Reichenbach 1989 ex Stanier 1940) Nakagawa et al. 1997
synonyms
- @ref: 20215
- synonym: Cytophaga diffluens
@ref: 1442
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Persicobacteraceae
genus: Persicobacter
species: Persicobacter diffluens
full scientific name: Persicobacter diffluens (Reichenbach 1989) Nakagawa et al. 1997 emend. Muramatsu et al. 2010
strain designation: B1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1442
- name: CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172)
- growth: yes
- link: https://mediadive.dsmz.de/medium/172
- composition: Name: CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172) Composition: NaCl 24.7 g/l Agar 15.0 g/l MgSO4 x 7 H2O 6.3 g/l MgCl2 x 6 H2O 4.6 g/l CaCl2 x 2 H2O 1.2 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KCl 0.7 g/l NaHCO3 0.2 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1442 | positive | growth | 20-25 | |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 1442 | marine mud | Bombay | India | IND | Asia |
| 67770 | Black sandy mud, lower littoral zone | Bombay | India | IND | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_4008.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_440;96_2037;97_2455;98_3037;99_4008&stattab=map
- Last taxonomy: Persicobacter
- 16S sequence: AB260929
- Sequence Identity:
- Total samples: 8750
- soil counts: 510
- aquatic counts: 5637
- animal counts: 2523
- plant counts: 80
Safety information
risk assessment
- @ref: 1442
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Persicobacter diffluens gene for 16S ribosomal RNA, partial sequence, strain: NCIMB 1402 | D12660 | 1256 | ena | 981 |
| 1442 | Persicobacter diffluens gene for 16S ribosomal RNA, partial sequence, strain: NBRC 15940 | AB260929 | 1447 | ena | 981 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 1442 | 42.6-43.8 | high performance liquid chromatography (HPLC) |
| 1442 | 42.3 | |
| 67770 | 42 | Buoyant density centrifugation (BD) |
External links
@ref: 1442
culture collection no.: DSM 3658, ATCC 49458, IAM 14117, JCM 8513, LMG 13036, NBRC 15940, NCIMB 1402, IFO 15940, KCTC 12353
straininfo link
- @ref: 74952
- straininfo: 9864
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19734280 | Persicobacter psychrovividus sp. nov., isolated from shellfish, and emended descriptions of the genus Persicobacter and Persicobacter diffluens. | Muramatsu Y, Takahashi M, Kaneyasu M, Iino T, Suzuki KI, Nakagawa Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.016113-0 | 2009 | Animals, Bacteroidetes/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Gastropoda/*microbiology, Molecular Sequence Data, Phylogeny, Polyplacophora/*microbiology, RNA, Ribosomal, 16S/genetics, Shellfish/*microbiology | Metabolism |
| Phylogeny | 22659504 | Luteivirga sdotyamensis gen. nov., sp. nov., a novel bacterium of the phylum Bacteroidetes isolated from the Mediterranean sponge Axinella polypoides. | Haber M, Shefer S, Giordano A, Orlando P, Gambacorta A, Ilan M | Int J Syst Evol Microbiol | 10.1099/ijs.0.043398-0 | 2012 | Animals, Axinella/*microbiology, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Israel, Mediterranean Sea, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1442 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3658) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3658 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 74952 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID9864.1 | StrainInfo: A central database for resolving microbial strain identifiers |