Name: Persicobacter diffluens B1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5464

Type strain:

Species: Persicobacter diffluens

Strain Designation: B1

Culture col. no.: DSM 3658, ATCC 49458, IAM 14117, JCM 8513, LMG 13036, NBRC 15940, NCIMB 1402, IFO 15940, KCTC 12353

Strain history: NCIMB 1402 <-- R. A. Lewin B1 <-- Y. Freitas.

NCBI tax ID(s): 981 (species)

SI-ID 9864

LMG 13036, DSM 3658, IAM 14117, NCIMB 1402, ATCC 49458, NCMB 1402, JCM 8513, IFO 15940, NBRC 15940, KCTC 12353

Section

Persicobacter diffluens B1 is a bacterium that was isolated from marine mud.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Persicobacteraceae*
	Genus	*Persicobacter*
	Species	**Persicobacter diffluens**
	Full Scientific Name (LPSN)	Persicobacter diffluens (Reichenbach 1989 ex Stanier 1940) Nakagawa et al. 1997

Synonym

Cytophaga diffluens

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1442]

Culture medium

CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172)

[Ref.: #1442]

Culture medium growth

[Ref.: #1442]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1442]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1442]			growth	20-25 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1442]	Sample type/isolated from	marine mud
[Ref.: #1442]	Geographic location (country and/or sea, region)	Bombay
[Ref.: #1442]	Country	India
[Ref.: #1442]	Country ISO 3 Code	IND
[Ref.: #1442]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Black sandy mud, lower littoral zone
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bombay
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB260929 (>99% sequence identity) for Persicobacter from Microbeatlas

Aquatic Samples	5637
Soil Samples	510
Animal Samples	2523
Plant Samples	80
Total Samples	8750

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1442]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1442]	Persicobacter diffluens gene for 16S ribosomal RNA, partial sequence, strain: NBRC 15940	AB260929	1447	ENA	981 tax ID
[Ref.: #20218]	Persicobacter diffluens gene for 16S ribosomal RNA, partial sequence, strain: NCIMB 1402	D12660	1256	ENA	981 tax ID	*

[Ref.: #1442]	GC-content	42.6-43.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #1442]	GC-content	42.3 mol%
[Ref.: #67770]	GC-content	42 mol%	Buoyant density centrifugation (BD)

Availability in culture collections External links

[Ref.: #1442]

Culture collection no.

DSM 3658, ATCC 49458, IAM 14117, JCM 8513, LMG 13036, NBRC 15940, NCIMB 1402, IFO 15940, KCTC 12353

[Ref.: #74952]

SI-ID 9864

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteivirga sdotyamensis gen. nov., sp. nov., a novel bacterium of the phylum Bacteroidetes isolated from the Mediterranean sponge Axinella polypoides.	Haber M, Shefer S, Giordano A, Orlando P, Gambacorta A, Ilan M	Int J Syst Evol Microbiol	10.1099/ijs.0.043398-0	2012	*
Phylogeny	Persicobacter psychrovividus sp. nov., isolated from shellfish, and emended descriptions of the genus Persicobacter and Persicobacter diffluens.	Muramatsu Y, Takahashi M, Kaneyasu M, Iino T, Suzuki KI, Nakagawa Y	Int J Syst Evol Microbiol	10.1099/ijs.0.016113-0	2009	*

References

#1442

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3658

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#74952

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9864.1 )

* These data were automatically processed and therefore are not curated

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