Strain identifier

BacDive ID: 5270

Type strain: Yes

Species: Enterococcus avium

Strain Designation: E6844, W17

Strain history: CIP <- 1987, NCFB <- D. Jones, UK: strain W17

NCBI tax ID(s): 1140002 (strain), 33945 (species)

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General

@ref: 9001

BacDive-ID: 5270

DSM-Number: 20679

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped

description: Enterococcus avium E6844 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from human faeces.

NCBI tax id

NCBI tax idMatching level
33945species
1140002strain

strain history

@refhistory
9001<- NCDO <- D. Jones <- (O. Guthof, E6844)
67770ATCC 14025 <-- NCTC 9938 <-- Streptococcus Ref. Lab. London.
116670CIP <- 1987, NCFB <- D. Jones, UK: strain W17

doi: 10.13145/bacdive5270.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Enterococcaceae
  • genus: Enterococcus
  • species: Enterococcus avium
  • full scientific name: Enterococcus avium (ex Nowlan and Deibel 1967) Collins et al. 1984

@ref: 9001

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Enterococcaceae

genus: Enterococcus

species: Enterococcus avium

full scientific name: Enterococcus avium (ex Nowlan and Deibel 1967) Collins et al. 1984

strain designation: E6844, W17

type strain: yes

Morphology

cell morphology

  • @ref: 116670
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 116670
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9001COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9001TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40509MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
116670CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
9001positivegrowth37mesophilic
40509positivegrowth37mesophilic
67770positivegrowth37mesophilic
116670positivegrowth10-41

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
9001microaerophile
116670facultative anaerobe

halophily

  • @ref: 116670
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 6.5 %

murein

  • @ref: 9001
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol+builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose+builds acid from16443
68371D-lyxose+builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol+builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside+builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose+builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol+builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
116670esculin-hydrolysis4853
116670nitrate-reduction17632
116670nitrite-reduction16301
116670nitrate+respiration17632
68381arginine-hydrolysis29016
68381D-ribose+builds acid from16988
68381D-mannitol+builds acid from16899
68381sorbitol+builds acid from30911
68381trehalose+builds acid from27082
68381raffinose-builds acid from16634
68381L-arabinose+builds acid from30849
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381maltose+builds acid from17306
68381melibiose-builds acid from28053
68381melezitose+builds acid from6731
68381methyl beta-D-glucopyranoside+builds acid from320055
68381D-tagatose+builds acid from16443
68381urea-hydrolysis16199

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin+
11667015688acetoin-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68381urease-3.5.1.5
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
116670oxidase-
116670beta-galactosidase-3.2.1.23
116670alcohol dehydrogenase-1.1.1.1
116670catalase-1.11.1.6
116670gamma-glutamyltransferase-2.3.2.2
116670lysine decarboxylase-4.1.1.18
116670ornithine decarboxylase-4.1.1.17

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116670--++------++----+---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116670+--++--+-++++++--++++++++++++-++-+---++-++--+++/---

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
9001-+----++++/-+-+/-+--++-+-+---+-+++--
9001-+----+++++-+++-++-+-+---+-++++/--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116670+++++-----++---+-++++----+++--+--+--++----+-------------+--+--------------------------+------------

Isolation, sampling and environmental information

isolation

@refsample type
9001human faeces
67770Human feces
116670Human, Faeces

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
90012Risk group (German classification)
1166702Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Enterococcus avium strain BCRC 10801 16S-23S ribosomal RNA intergenic spacer, complete sequenceAY351315239ena1140002
20218Enterococcus avium gene for 16S ribosomal RNA, partial sequenceD31674166ena1140002
20218E.avium 16S rRNA gene, partial (strain ATTC 14025 (CCUG 7983))Y12907366ena1140002
9001Enterococcus avium strain ATCC 14025 16S ribosomal RNA gene, partial sequenceDQ4118111481ena1140002
67770Enterococcus avium 16S ribosomal RNA gene, partial sequenceAF1335351524ena1140002
67770Enterococcus avium 16S rRNA gene, strain LMG 10744AJ3018251833ena1140002
67770Enterococcus avium gene for 16S ribosomal RNA, partial sequence, strain: JCM 8722LC0962121498ena33945
67770Enterococcus avium (strain NCFB 2369T) 16S rRNA geneY182741429ena1140002

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterococcus avium ATCC 14025GCA_000407245scaffoldncbi1140002
66792Enterococcus avium NCTC9938GCA_900447655contigncbi33945
66792Enterococcus avium DSM 20679GCA_001885775scaffoldncbi33945
66792Enterococcus avium ATCC 14025GCA_000406965scaffoldncbi1140002
66792Enterococcus avium ATCC 14025 [PRJNA206270]1140002.3wgspatric1140002
66792Enterococcus avium ATCC 14025 [PRJNA206363]1140002.4wgspatric1140002
66792Enterococcus avium strain DSM 2067933945.4wgspatric33945
66792Enterococcus avium strain NCTC993833945.10wgspatric33945
66792Enterococcus avium ATCC 140252545824652draftimg1140002
66792Enterococcus avium ATCC 140252541047449draftimg1140002

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.823no
flagellatedno95.638no
gram-positiveyes87.8no
anaerobicno92.3yes
aerobicno95.167no
halophileyes62.026no
spore-formingno86.366no
thermophileno99.645no
glucose-utilyes84.582no
glucose-fermentyes84.981no

External links

@ref: 9001

culture collection no.: DSM 20679, ATCC 14025, NCDO 2369, NCTC 9938, CCUG 7983, JCM 8722, BCRC 10801, BCRC 14728, CCM 4049, CECT 968, CIP 103019, LMG 10744, NBRC 100477, NCIMB 702369, VKM B-1673, VTT E-97804, IMET 3257

straininfo link

  • @ref: 74760
  • straininfo: 2238

literature

  • topic: Metabolism
  • Pubmed-ID: 33390541
  • title: Production of Optically Active Hexahydrocurcumin by Human Intestinal Bacterium in Vitro.
  • authors: Niwa T, Yokoyama SI, Mochizuki M, Osawa T
  • journal: Biol Pharm Bull
  • DOI: 10.1248/bpb.b20-00584
  • year: 2021
  • mesh: Curcumin/*analogs & derivatives/metabolism, Enterococcus/*isolation & purification/*metabolism, Feces/microbiology, Humans, Optical Rotation
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9001Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20679)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20679
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40509Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14770
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
74760Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID2238.1StrainInfo: A central database for resolving microbial strain identifiers
116670Curators of the CIPCollection of Institut Pasteur (CIP 103019)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103019