Strain identifier
BacDive ID: 5209
Type strain: 
Species: Xenorhabdus magdalenensis
Strain history: <- S. Edgington, CABI; IMI 397775
NCBI tax ID(s): 995054 (species)
version 8.1 (current version)
General
@ref: 17800
BacDive-ID: 5209
DSM-Number: 24915
keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen
description: Xenorhabdus magdalenensis DSM 24915 is a mesophilic, Gram-negative animal pathogen that was isolated from gut of the insect-pathogenic nematode Steinernema australe.
NCBI tax id
- NCBI tax id: 995054
- Matching level: species
strain history
- @ref: 17800
- history: <- S. Edgington, CABI; IMI 397775
doi: 10.13145/bacdive5209.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Morganellaceae
- genus: Xenorhabdus
- species: Xenorhabdus magdalenensis
- full scientific name: Xenorhabdus magdalenensis Tailliez et al. 2012
@ref: 17800
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Morganellaceae
genus: Xenorhabdus
species: Xenorhabdus magdalenensis
full scientific name: Xenorhabdus magdalenensis Tailliez et al. 2012
type strain: yes
Morphology
cell morphology
- @ref: 30356
- gram stain: negative
pigmentation
- @ref: 30356
- production: no
Culture and growth conditions
culture medium
- @ref: 17800
- name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535b
- composition: Name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17800 | positive | growth | 28 | mesophilic |
| 30356 | positive | growth | 34 | mesophilic |
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30356 | 17234 | glucose | + | carbon source |
| 30356 | 17754 | glycerol | + | carbon source |
| 30356 | 17306 | maltose | + | carbon source |
| 30356 | 37684 | mannose | + | carbon source |
| 30356 | 506227 | N-acetylglucosamine | + | carbon source |
| 30356 | 27082 | trehalose | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 17800
- sample type: gut of the insect-pathogenic nematode Steinernema australe
- host species: Steinernema australe
- geographic location: Patagonia, Isla Magdalena
- country: Chile
- origin.country: CHL
- continent: Middle and South America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Invertebrates (Other) | #Nematoda |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
taxonmaps
- @ref: 69479
- File name: preview.99_117128.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_27;97_494;98_79114;99_117128&stattab=map
- Last taxonomy: Xenorhabdus
- 16S sequence: HQ877464
- Sequence Identity:
- Total samples: 816
- soil counts: 11
- aquatic counts: 5
- animal counts: 795
- plant counts: 5
Safety information
risk assessment
- @ref: 17800
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17800
- description: Xenorhabdus magdalenensis strain IMI 397775 16S ribosomal RNA gene, partial sequence
- accession: HQ877464
- length: 1458
- database: ena
- NCBI tax ID: 995054
External links
@ref: 17800
culture collection no.: DSM 24915, IMI 397775
straininfo link
- @ref: 74701
- straininfo: 406256
literature
- topic: Phylogeny
- Pubmed-ID: 21948091
- title: Description of Xenorhabdus magdalenensis sp. nov., the symbiotic bacterium associated with Steinernema australe.
- authors: Tailliez P, Pages S, Edgington S, Tymo LM, Buddie AG
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.034322-0
- year: 2011
- mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Molecular Sequence Data, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhabditida/*microbiology, Sequence Analysis, DNA, Symbiosis, Xenorhabdus/*classification/genetics/isolation & purification
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 17800 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24915) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24915 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30356 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26696 | 28776041 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 74701 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406256.1 | StrainInfo: A central database for resolving microbial strain identifiers |