Strain identifier
BacDive ID: 5180
Type strain: 
Species: Tatumella morbirosei
Strain Designation: BD878, CMC6
Strain history: <- T. A. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; BD 878 <- LMG <- NCPPB <- C. Pujol, Dep. of Plant Pathology, University of California
NCBI tax ID(s): 642227 (species)
version 8.1 (current version)
General
@ref: 17390
BacDive-ID: 5180
DSM-Number: 23827
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, rod-shaped, plant pathogen
description: Tatumella morbirosei BD878 is a facultative anaerobe, mesophilic, Gram-negative plant pathogen that was isolated from pineapple.
NCBI tax id
- NCBI tax id: 642227
- Matching level: species
strain history
- @ref: 17390
- history: <- T. A. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; BD 878 <- LMG <- NCPPB <- C. Pujol, Dep. of Plant Pathology, University of California
doi: 10.13145/bacdive5180.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Erwiniaceae
- genus: Tatumella
- species: Tatumella morbirosei
- full scientific name: Tatumella morbirosei Brady et al. 2010
@ref: 17390
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Erwiniaceae
genus: Tatumella
species: Tatumella morbirosei
full scientific name: Tatumella morbirosei Brady et al. 2010
strain designation: BD878, CMC6
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 29388 | negative | 2 µm | 1 µm | rod-shaped | no | |
| 69480 | yes | 97.894 | ||||
| 69480 | negative | 99.965 |
pigmentation
- @ref: 29388
- production: yes
multimedia
- @ref: 17390
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_23827.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 17390
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17390 | positive | growth | 28 | mesophilic |
| 29388 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 29388
- oxygen tolerance: facultative anaerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29388 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.9 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29388 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
| 29388 | 15963 | ribitol | + | carbon source |
| 29388 | 22599 | arabinose | + | carbon source |
| 29388 | 22653 | asparagine | + | carbon source |
| 29388 | 35391 | aspartate | + | carbon source |
| 29388 | 16947 | citrate | + | carbon source |
| 29388 | 23652 | dextrin | + | carbon source |
| 29388 | 15740 | formate | + | carbon source |
| 29388 | 28757 | fructose | + | carbon source |
| 29388 | 28260 | galactose | + | carbon source |
| 29388 | 24265 | gluconate | + | carbon source |
| 29388 | 17234 | glucose | + | carbon source |
| 29388 | 25115 | malate | + | carbon source |
| 29388 | 17306 | maltose | + | carbon source |
| 29388 | 29864 | mannitol | + | carbon source |
| 29388 | 37684 | mannose | + | carbon source |
| 29388 | 506227 | N-acetylglucosamine | + | carbon source |
| 29388 | 51850 | methyl pyruvate | + | carbon source |
| 29388 | 30031 | succinate | + | carbon source |
| 29388 | 27082 | trehalose | + | carbon source |
| 29388 | 17632 | nitrate | + | reduction |
enzymes
- @ref: 29388
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 17390
- sample type: pineapple
- geographic location: Polomok
- country: Philippines
- origin.country: PHL
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Plant | #Fruit (Seed) |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_7150.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_651;98_5257;99_7150&stattab=map
- Last taxonomy: Erwiniaceae
- 16S sequence: EU344769
- Sequence Identity:
- Total samples: 17545
- soil counts: 1348
- aquatic counts: 2592
- animal counts: 11423
- plant counts: 2182
Safety information
risk assessment
- @ref: 17390
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17390
- description: Tatumella morbirosei strain LMG 23360 16S ribosomal RNA gene, complete sequence
- accession: EU344769
- length: 1492
- database: ena
- NCBI tax ID: 642227
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Tatumella morbirosei LMG 23360 | GCA_000757425 | contig | ncbi | 642227 |
| 66792 | Tatumella morbirosei LMG 23360 | 642227.3 | wgs | patric | 642227 |
| 66792 | Tatumella morbirosei strain LMG 23360 | 642227.5 | plasmid | patric | 642227 |
| 66792 | Tatumella morbirosei LMG 23360 | 2636416092 | draft | img | 642227 |
GC content
- @ref: 29388
- GC-content: 50.2
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.146 | yes |
| anaerobic | no | 98.984 | no |
| halophile | no | 79.787 | no |
| spore-forming | no | 96.326 | yes |
| glucose-util | yes | 93.862 | no |
| thermophile | no | 99.363 | yes |
| flagellated | no | 80.481 | yes |
| aerobic | no | 73.712 | yes |
| motile | yes | 88.379 | no |
| glucose-ferment | yes | 86.435 | no |
External links
@ref: 17390
culture collection no.: DSM 23827, LMG 23360, NCPPB 4036
straininfo link
- @ref: 74672
- straininfo: 118258
literature
- topic: Phylogeny
- Pubmed-ID: 19654354
- title: Transfer of Pantoea citrea, Pantoea punctata and Pantoea terrea to the genus Tatumella emend. as Tatumella citrea comb. nov., Tatumella punctata comb. nov. and Tatumella terrea comb. nov. and description of Tatumella morbirosei sp. nov.
- authors: Brady CL, Venter SN, Cleenwerck I, Vandemeulebroecke K, De Vos P, Coutinho TA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.012070-0
- year: 2009
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Fruit/microbiology, Molecular Sequence Data, Pantoea/*classification/genetics/isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil Microbiology
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 17390 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23827) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23827 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 29388 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25795 | 28776041 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
| 74672 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID118258.1 | StrainInfo: A central database for resolving microbial strain identifiers |