Tatumella morbirosei (DSM 23827, LMG 23360, NCPPB 4036)

Name: Tatumella morbirosei (DSM 23827, LMG 23360, NCPPB 4036)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5180

Type strain

Strain Designation BD878, CMC6

Culture col. no. DSM 23827 LMG 23360 NCPPB 4036 BD878 CMC6

NCBI tax ID(s) 642227

Special Collections DSMZ Literature strains

History <- T. A. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; BD 878 <- LMG <- NCPPB <- C. Pujol, Dep. of Plant Pathology, University of California

Links

Tatumella morbirosei BD878 is a facultative anaerobe, Gram-negative, rod-shaped plant pathogen that was isolated from pineapple.

Gram-negative rod-shaped facultative anaerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 118258

DSM 23827,NCPPB 4036,LMG 23360

@ref 20215

Last LPSN update 2026-02-09 11:18:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Erwiniaceae

Genus Tatumella

Species Tatumella morbirosei

Full scientific name Tatumella morbirosei Brady et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29388	negative	2 µm	1 µm	rod-shaped
125438	negative				99.494
125439	negative				92.2

Pigmentation

29388

Productionyes

Multimedia

@ref:	17390
multimedia content:	DSM_23827.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_23827.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17390	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17390	positive	growth	28
29388	positive	growth	28

Physiology and metabolism

Oxygen tolerance

29388

Oxygen tolerancefacultative anaerobe

Spore formation

29388

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29388	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
29388	22599 ChEBI	arabinose	+	carbon source
29388	22653 ChEBI	asparagine	+	carbon source
29388	35391 ChEBI	aspartate	+	carbon source
29388	16947 ChEBI	citrate	+	carbon source
29388	23652 ChEBI	dextrin	+	carbon source
29388	15740 ChEBI	formate	+	carbon source
29388	28757 ChEBI	fructose	+	carbon source
29388	28260 ChEBI	galactose	+	carbon source
29388	24265 ChEBI	gluconate	+	carbon source
29388	17234 ChEBI	glucose	+	carbon source
29388	25115 ChEBI	malate	+	carbon source
29388	17306 ChEBI	maltose	+	carbon source
29388	29864 ChEBI	mannitol	+	carbon source
29388	37684 ChEBI	mannose	+	carbon source
29388	51850 ChEBI	methyl pyruvate	+	carbon source
29388	506227 ChEBI	N-acetylglucosamine	+	carbon source
29388	17632 ChEBI	nitrate	+	reduction
29388	15963 ChEBI	ribitol	+	carbon source
29388	30031 ChEBI	succinate	+	carbon source
29388	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29388	catalase	+	1.11.1.6

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	acetate fermentation	100	4 of 4
66794	pentose phosphate pathway	100	11 of 11
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	quinate degradation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	enterobactin biosynthesis	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	ketogluconate metabolism	100	8 of 8
66794	L-lactaldehyde degradation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	starch degradation	100	10 of 10
66794	acetoin degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	ribulose monophosphate pathway	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	taurine degradation	100	1 of 1
66794	photosynthesis	92.86	13 of 14
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	proline metabolism	90.91	10 of 11
66794	vitamin B6 metabolism	90.91	10 of 11
66794	allantoin degradation	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	purine metabolism	87.23	82 of 94
66794	glutathione metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	methionine metabolism	84.62	22 of 26
66794	phenylalanine metabolism	84.62	11 of 13
66794	pyrimidine metabolism	84.44	38 of 45
66794	NAD metabolism	83.33	15 of 18
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	valine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	isoleucine metabolism	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	histidine metabolism	72.41	21 of 29
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	arginine metabolism	70.83	17 of 24
66794	glycolysis	70.59	12 of 17
66794	urea cycle	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	degradation of pentoses	67.86	19 of 28
66794	oxidative phosphorylation	67.03	61 of 91
66794	cysteine metabolism	66.67	12 of 18
66794	octane oxidation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	citric acid cycle	64.29	9 of 14
66794	lipid metabolism	61.29	19 of 31
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	degradation of sugar acids	60	15 of 25
66794	3-chlorocatechol degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	tryptophan metabolism	57.89	22 of 38
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	propanol degradation	57.14	4 of 7
66794	tyrosine metabolism	57.14	8 of 14
66794	degradation of hexoses	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	metabolism of disaccharids	54.55	6 of 11
66794	glycine metabolism	50	5 of 10
66794	lactate fermentation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	phenol degradation	45	9 of 20
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	ascorbate metabolism	40.91	9 of 22
66794	propionate fermentation	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	myo-inositol biosynthesis	40	4 of 10
66794	polyamine pathway	39.13	9 of 23
66794	sulfate reduction	38.46	5 of 13
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	arachidonic acid metabolism	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	coenzyme M biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	toluene degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Plant	#Fruit (Seed)
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17390	pineapple	Polomok	Philippines	PHL	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU344769 (>99% sequence identity) for Erwiniaceae from Microbeatlas

Aquatic Samples	2592
Soil Samples	1348
Animal Samples	11423
Plant Samples	2182
Total Samples	17545

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
17390		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Tatumella morbirosei LMG 23360	contig		642227.3		642227	75.2
66792	Tmorbiroseiassem5 assembly for Tatumella morbirosei LMG 23360	scaffold	GCA_000757425	642227.6	2636416092	642227	74.88

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17390	Tatumella morbirosei strain LMG 23360 16S ribosomal RNA gene, complete sequence	EU344769	1492		642227

GC content

29388

GC-content (mol%)50.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tatumella morbirosei LMG 23360
NCBI: GCA_000757425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	89.20	no
125439	motility	BacteriaNetⓘ	yes	72.90	no
125439	gram_stain	BacteriaNetⓘ	negative	92.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tatumella morbirosei LMG 23360
PATRIC: 642227.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.49	yes
125438	anaerobic	anaerobicⓘ	no	98.08	yes
125438	aerobic	aerobicⓘ	no	71.76	yes
125438	spore-forming	spore-formingⓘ	no	89.76	yes
125438	thermophilic	thermophileⓘ	no	99.00	no
125438	flagellated	motile2+ⓘ	yes	81.93	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Degradation of the low-calorie sugar substitute 5-ketofructose by different bacteria.	Schiessl J, Kosciow K, Garschagen LS, Hoffmann JJ, Heymuth J, Franke T, Deppenmeier U.	Appl Microbiol Biotechnol	10.1007/s00253-021-11168-3	2021
	Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites.	Palmer M, de Maayer P, Poulsen M, Steenkamp ET, van Zyl E, Coutinho TA, Venter SN.	Stand Genomic Sci	10.1186/s40793-016-0144-z	2016
Phylogeny	Transfer of Pantoea citrea, Pantoea punctata and Pantoea terrea to the genus Tatumella emend. as Tatumella citrea comb. nov., Tatumella punctata comb. nov. and Tatumella terrea comb. nov. and description of Tatumella morbirosei sp. nov.	Brady CL, Venter SN, Cleenwerck I, Vandemeulebroecke K, De Vos P, Coutinho TA	Int J Syst Evol Microbiol	10.1099/ijs.0.012070-0	2009

References

#17390	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23827
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25795	IJSEM 484 2010 ( DOI 10.1099/ijs.0.012070-0 , PubMed 19654354 )
#29388	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25795
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tatumella morbirosei (DSM 23827, LMG 23360, NCPPB 4036)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000757425

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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