Strain identifier

BacDive ID: 5129

Type strain: Yes

Species: Salmonella enterica subsp. indica

Strain Designation: 1240

Strain history: CIP <- 1986, L. Le Minor, Inst. Pasteur, Paris, France, Salmonella choleraesuis subsp. indica <- F. Kauffmann, Copenhagen, Denmark: strain 1240K (serovar Ferlac)

NCBI tax ID(s): 59207 (subspecies)

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General

@ref: 5576

BacDive-ID: 5129

DSM-Number: 14848

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Salmonella enterica subsp. indica 1240 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 59207
  • Matching level: subspecies

strain history

@refhistory
5576<- CIP; CIP 102501 <- L. Le Minor; <- A. F. Kaufmann; 1240
119052CIP <- 1986, L. Le Minor, Inst. Pasteur, Paris, France, Salmonella choleraesuis subsp. indica <- F. Kauffmann, Copenhagen, Denmark: strain 1240K (serovar Ferlac)

doi: 10.13145/bacdive5129.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica subsp. indica
  • full scientific name: Salmonella enterica subsp. indica (Le Minor et al. 1987) Le Minor and Popoff 1987

  • synonyms

    • @ref: 20215
    • synonym: Salmonella choleraesuis subsp. indica

@ref: 5576

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. indica

full scientific name: Salmonella enterica subsp. indica (Le Minor et al. 1987) Le Minor and Popoff 1987

strain designation: 1240

type strain: yes

Morphology

cell morphology

  • @ref: 119052
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5576COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
5576TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
34910MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119052CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119052CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
34910positivegrowth30mesophilic
49868positivegrowth30mesophilic
5576positivegrowth37mesophilic
119052positivegrowth10-41
119052nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119052
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11905229864mannitol+fermentation
11905216947citrate+carbon source
11905217234glucose+fermentation
11905217716lactose-fermentation
11905217632nitrate+reduction
11905216301nitrite+reduction
11905215792malonate-assimilation
119052132112sodium thiosulfate+builds gas from
11905217632nitrate+respiration
6837418257ornithine+degradation
6837429016arginine+hydrolysis
6837425094lysine+degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan-energy source
6837417634D-glucose+builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose+builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose+builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from

antibiotic resistance

  • @ref: 119052
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleno
11905235581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6837435581indole-
11905215688acetoin-
11905217234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase+3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase+4.1.1.18
68374arginine dihydrolase+3.5.3.6
68374ornithine decarboxylase+4.1.1.17
119052oxidase-
119052beta-galactosidase+3.2.1.23
119052alcohol dehydrogenase-1.1.1.1
119052gelatinase+
119052catalase+1.11.1.6
119052lysine decarboxylase+4.1.1.18
119052ornithine decarboxylase+4.1.1.17
119052phenylalanine ammonia-lyase-4.3.1.24
119052tryptophan deaminase-
119052urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119052-+++-+++--++++++----

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
49868+++-------++--+---++-+--+++-----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119052+++++-+--++++++--+-+++-+-----+-+-+----+----++--+-++-++++---++----++--------++-+++-+---+--++++++-+--

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
55762Risk group (German classification)
1190522Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Salmonella enterica subsp. indica strain DSM 14848 16S ribosomal RNA gene, partial sequence
  • accession: EU014680
  • length: 1414
  • database: ena
  • NCBI tax ID: 59207

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica 1240GCA_014306235contigncbi28901
66792Salmonella enterica subsp. indica CCUG30038GCA_018033035contigncbi59207
66792Salmonella enterica subsp. enterica serovar Heidelberg 1240GCA_025176875scaffoldncbi611

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.954no
flagellatedno50no
gram-positiveno98.687no
anaerobicno90.523no
aerobicyes71.798no
halophileno93.937no
spore-formingno94.03no
glucose-fermentyes92.727no
thermophileno98.767no
glucose-utilyes92.416no

External links

@ref: 5576

culture collection no.: DSM 14848, ATCC 43976, CIP 102501, CCUG 30038, NCTC 12420

straininfo link

  • @ref: 74621
  • straininfo: 42159

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5576Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14848)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14848
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34910Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14194
49868Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30038)https://www.ccug.se/strain?id=30038
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68374Automatically annotated from API ID32E
68382Automatically annotated from API zym
74621Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42159.1StrainInfo: A central database for resolving microbial strain identifiers
119052Curators of the CIPCollection of Institut Pasteur (CIP 102501)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102501