Salmonella enterica subsp. indica (DSM 14848, ATCC 43976, CIP 102501)

Name: Salmonella enterica subsp. indica (DSM 14848, ATCC 43976, CIP 102501)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5129

Type strain

Strain Designation 1240

Culture col. no. DSM 14848 ATCC 43976 CIP 102501 CCUG 30038 1240 1 more

NCBI tax ID(s) 59207

Special Collections DSMZ CCUG CIP

History DSMZ <- CIP; CIP 102501 <- L. Le Minor; <- A. F. Kaufmann; 1240 CIP <- 1986, L. Le Minor, Inst. Pasteur, Paris, France, Salmonella choleraesuis subsp. indica <- F. Kauffmann, Copenhagen, Denmark: strain 1240K (serovar Ferlac)

Links

Salmonella enterica subsp. indica 1240 is a facultative anaerobe, Gram-negative, motile bacterium of the family Enterobacteriaceae.

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42159

ATCC 43976,CIP 102501,CCUG 30038,DSM 14848,NCTC 12420

@ref 20215

Last LPSN update 2026-05-29 08:26:06

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Salmonella

Species Salmonella enterica subsp. indica

Full scientific name Salmonella enterica subsp. indica (Le Minor et al. 1987) Le Minor and Popoff 1987

Synonyms (1)

Salmonella choleraesuis subsp. indica

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
119052	negative	rod-shaped
125438	negative			100

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5576	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5576	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
34910	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
119052	CIP Medium 72	Medium recipe at CIP
119052	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5576	positive	growth	37
34910	positive	growth	30
49868	positive	growth	30
119052	positive	growth	10-41
119052	negative	growth	5

Physiology and metabolism

Oxygen tolerance

119052

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		98.352

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68374	29016 ChEBI	arginine	+	hydrolysis	from API ID32E
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
119052	16947 ChEBI	citrate	+	carbon source
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	+	builds acid from	from API ID32E
68374	16899 ChEBI	D-mannitol	+	builds acid from	from API ID32E
119052	17234 ChEBI	glucose	+	fermentation
68374	30849 ChEBI	L-arabinose	+	builds acid from	from API ID32E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	+	builds acid from	from API ID32E
119052	17716 ChEBI	lactose	-	fermentation
68374	25094 ChEBI	lysine	+	degradation	from API ID32E
68374	15792 ChEBI	malonate	-	assimilation	from API ID32E
119052	15792 ChEBI	malonate	-	assimilation
68374	17306 ChEBI	maltose	+	builds acid from	from API ID32E
119052	29864 ChEBI	mannitol	+	fermentation
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
119052	17632 ChEBI	nitrate	+	reduction
119052	17632 ChEBI	nitrate	+	respiration
119052	16301 ChEBI	nitrite	+	reduction
68374	18257 ChEBI	ornithine	+	degradation	from API ID32E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
119052	132112 ChEBI	sodium thiosulfate	+	builds gas from
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68374	17992 ChEBI	sucrose	-	builds acid from	from API ID32E
68374	27082 ChEBI	trehalose	+	builds acid from	from API ID32E
68374	27897 ChEBI	tryptophan	-	energy source	from API ID32E
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119052	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68374	35581 ChEBI	indole		from API ID32E
119052	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
119052	15688 ChEBI	acetoin		-
119052	17234 ChEBI	glucose			+
68374	35581 ChEBI	indole	-			from API ID32E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119052	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68374	alpha-galactosidase	+	3.2.1.22	from API ID32E
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68374	arginine dihydrolase	+	3.5.3.6	from API ID32E
68382	beta-galactosidase	+	3.2.1.23	from API zym
119052	beta-galactosidase	+	3.2.1.23
68374	beta-galactosidase	+	3.2.1.23	from API ID32E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68374	beta-glucosidase	-	3.2.1.21	from API ID32E
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68374	beta-glucuronidase	+	3.2.1.31	from API ID32E
119052	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119052	gelatinase	+
68374	L-aspartate arylamidase	-	3.4.11.21	from API ID32E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68374	lipase	-		from API ID32E
68382	lipase (C 14)	-		from API zym
119052	lysine decarboxylase	+	4.1.1.18
68374	lysine decarboxylase	+	4.1.1.18	from API ID32E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119052	ornithine decarboxylase	+	4.1.1.17
68374	ornithine decarboxylase	+	4.1.1.17	from API ID32E
119052	oxidase	-
119052	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
119052	tryptophan deaminase	-
119052	urease	-	3.5.1.5
68374	urease	-	3.5.1.5	from API ID32E
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119052	-	+	+	+	-	+	+	+	-	-	+	+	+	+	+	+	-	-	-	-

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
49868	+	+	+	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	+	+	-	+	-	-	+	+	+	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119052	not determinedn.d.	+	+	+	+	+	-	+	-	-	+	+	+	+	+	+	-	-	+	-	+	+	+	-	+	-	-	-	-	-	+	-	+	-	+	-	-	-	-	+	-	-	-	-	+	+	-	-	+	-	+	+	-	+	+	+	+	-	-	-	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	-	+	+	+	-	+	-	-	-	+	-	-	+	+	+	+	+	+	-	+	-	-

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5576	2	Risk group (German classification) According to TRBA 466
119052	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1430623v1 assembly for Salmonella enterica 1240	contig	GCA_014306235	28901.13591		28901	65.3
66792	ASM2517687v1 assembly for Salmonella enterica subsp. enterica serovar Heidelberg 1240	scaffold	GCA_025176875	611.730		611	64.42
66792	PDT000909609.1 assembly for Salmonella enterica subsp. indica CCUG30038	contig	GCA_018033035	59207.12	8112385054	59207	57.28
124043	28265_D01 assembly for Salmonella enterica subsp. indica NCTC12420	contig	GCA_900456865	59207.6	8117441952	59207	44.39

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Salmonella enterica subsp. indica strain DSM 14848 16S ribosomal RNA gene, partial sequence	EU014680	1414		59207

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1430623v1 assembly for Salmonella enterica 1240
NCBI: GCA_014306235

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	83.61	no
125439	gram_stain	BacteriaNetⓘ	negative	86.89	no
125439	motility	BacteriaNetⓘ	yes	57.33	no
125439	spore_formation	BacteriaNetⓘ	no	98.35	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salmonella enterica subsp. enterica serovar Heidelberg 1240
NCBI: GCA_025176875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.01	yes
125438	aerobic	aerobicⓘ	no	74.47	no
125438	spore-forming	spore-formingⓘ	no	89.53	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	75.03	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	An evaluation of the species and subspecies of the genus Salmonella with whole genome sequence data: Proposal of type strains and epithets for novel S. enterica subspecies VII, VIII, IX, X and XI.	Pearce ME, Langridge GC, Lauer AC, Grant K, Maiden MCJ, Chattaway MA.	Genomics	10.1016/j.ygeno.2021.07.003	2021
	Isolation of Salmonella from ready-to-eat poultry meat and evaluation of its survival at low temperature, microwaving and simulated gastric fluids.	Akbar A, Anal AK.	J Food Sci Technol	10.1007/s13197-014-1354-2	2015
	Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes.	Bae JW, Rhee SK, Nam YD, Park YH.	Nucleic Acids Res	10.1093/nar/gni112	2005
	Bacterial phylogenetic tree construction based on genomic translation stop signals.	Xu L, Kuo J, Liu JK, Wong TY.	Microb Inform Exp	10.1186/2042-5783-2-6	2012
	Novel Heptaplex PCR-Based Diagnostics for Enteric Fever Caused by Typhoidal Salmonella Serovars and Its Applicability in Clinical Blood Culture.	Kim HJ, Jung Y, Kim MJ, Kim HY.	J Microbiol Biotechnol	10.4014/jmb.2307.07031	2023
Genetics	Real-Time PCR Method for the Rapid Detection and Quantification of Pathogenic Staphylococcus Species Based on Novel Molecular Target Genes.	Kim E, Yang SM, Won JE, Kim DY, Kim DS, Kim HY.	Foods	10.3390/foods10112839	2021
	Isolation and Identification of Flavones Responsible for the Antibacterial Activities of Tillandsia bergeri Extracts.	Lo MM, Benfodda Z, Dunyach-Remy C, Benimelis D, Roulard R, Fontaine JX, Mathiron D, Quero A, Molinie R, Meffre P.	ACS Omega	10.1021/acsomega.2c04195	2022
Biotechnology	Validation of the One Broth One Plate for Salmonella Method for Detection of Salmonella Spp. in Select Food and Environmental Samples: AOAC Performance Tested MethodSM 102002.	Alles S, Roman B, Le QN, Kurteu M, Elmerhebi E, Potter C, Mozola M, Thompson W, Bastin B, Donofrio R.	J AOAC Int	10.1093/jaoacint/qsaa149	2021
Metabolism	Receptor diversity and host interaction of bacteriophages infecting Salmonella enterica serovar Typhimurium.	Shin H, Lee JH, Kim H, Choi Y, Heu S, Ryu S.	PLoS One	10.1371/journal.pone.0043392	2012
Phylogeny	Comparison of Salmonella enterica serovar Typhimurium LT2 and non-LT2 salmonella genomic sequences, and genotyping of salmonellae by using PCR.	Kim HJ, Park SH, Kim HY.	Appl Environ Microbiol	10.1128/aem.00138-06	2006
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
Genetics	Comprehensive blueprint of Salmonella genomic plasticity identifies hotspots for pathogenicity genes.	Krishnakant Kushwaha S, Wu Y, Leonardo Avila H, Anand A, Sicheritz-Ponten T, Millard A, Amol Marathe S, Nobrega FL.	PLoS Biol	10.1371/journal.pbio.3002746	2024

References

#5576	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14848
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34910	; Curators of the CIP;
#49868	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30038
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68374	Automatically annotated from API ID32E .
#68382	Automatically annotated from API zym .
#119052	Collection of Institut Pasteur ; Curators of the CIP; CIP 102501
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Salmonella enterica subsp. indica (DSM 14848, ATCC 43976, CIP 102501)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API ID32E

API biotype100

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014306235

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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