Strain identifier

BacDive ID: 5128

Type strain: Yes

Species: Salmonella enterica subsp. diarizonae

Culture col. no.: CCUG 30040, DSM 14847, ATCC 43973, CIP 82.31, NCTC 10060

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General

@ref: 5575

BacDive-ID: 5128

DSM-Number: 14847

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Salmonella enterica subsp. diarizonae CCUG 30040 is a mesophilic bacterium of the family Enterobacteriaceae.

strain history

doi: 10.13145/bacdive5128.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica subsp. diarizonae
  • full scientific name: Salmonella enterica subsp. diarizonae (Le Minor et al. 1985) Le Minor and Popoff 1987
  • synonyms

    • @ref: 20215
    • synonym: Salmonella choleraesuis subsp. diarizonae

@ref: 5575

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. diarizonae

full scientific name: Salmonella enterica subsp. diarizonae (Le Minor et al. 1985) Le Minor and Popoff 1987

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5575COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
5575TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
5575CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
40232MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
5575positivegrowth30mesophilic
40232positivegrowth30mesophilic
49870positivegrowth30mesophilic

Physiology and metabolism

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
5575++++++-----++-++-+-+-
49870++++++-----++-++-+-+-

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
49870+++----+--++--++--++-+--+++--+--

Safety information

risk assessment

  • @ref: 5575
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5575
  • description: Salmonella enterica subsp. diarizonae strain DSM 14847 16S ribosomal RNA gene, partial sequence
  • accession: EU014688
  • length: 1368
  • database: ena
  • NCBI tax ID: 59204

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica subsp. diarizonae NCTC10381GCA_900478155completencbi59204
66792Salmonella enterica subsp. diarizonae HZS154GCA_002794415completencbi59204
66792Salmonella enterica subsp. diarizonae 16-SA00356GCA_004126495completencbi59204
66792Salmonella enterica subsp. diarizonae 11-01853GCA_001629755completencbi59204
66792Salmonella enterica subsp. diarizonae 11-01855GCA_001628755completencbi59204
66792Salmonella enterica subsp. diarizonae 11-01854GCA_001629775completencbi59204
66792Salmonella enterica subsp. diarizonae CCUG 30040TGCA_008692785contigncbi59204
66792Salmonella enterica subsp. diarizonae SBO13GCA_003668835scaffoldncbi59204
66792Salmonella enterica subsp. diarizonae SBO27GCA_003668815scaffoldncbi59204
66792Salmonella enterica subsp. diarizonae 50267GCA_001276875contigncbi59204
66792Salmonella enterica subsp. diarizonae 50268GCA_001276795contigncbi59204
66792Salmonella enterica subsp. diarizonae NCTC12417GCA_900706825contigncbi59204
66792Salmonella enterica subsp. diarizonae NCTC10060GCA_900456375contigncbi59204
66792Salmonella enterica subsp. diarizonae strain 11-0185359204.13completepatric59204
66792Salmonella enterica subsp. diarizonae strain 11-0185359204.15plasmidpatric59204
66792Salmonella enterica subsp. diarizonae strain 11-0185359204.16plasmidpatric59204
66792Salmonella enterica subsp. diarizonae strain 11-0185459204.14completepatric59204
66792Salmonella enterica subsp. diarizonae strain 11-0185459204.18plasmidpatric59204
66792Salmonella enterica subsp. diarizonae strain 11-0185459204.17plasmidpatric59204
66792Salmonella enterica subsp. diarizonae strain 11-0185559204.12completepatric59204
66792Salmonella enterica subsp. diarizonae strain 13400559204.54wgspatric59204
66792Salmonella enterica subsp. diarizonae strain 16-SA0035659204.57completepatric59204
66792Salmonella enterica subsp. diarizonae strain 26692559204.56wgspatric59204
66792Salmonella enterica subsp. diarizonae strain 31330459204.51wgspatric59204
66792Salmonella enterica subsp. diarizonae strain 49102759204.55wgspatric59204
66792Salmonella enterica subsp. diarizonae strain 5026759204.11wgspatric59204
66792Salmonella enterica subsp. diarizonae strain 5026859204.10wgspatric59204
66792Salmonella enterica subsp. diarizonae strain CCUG 30040T59204.59wgspatric59204
66792Salmonella enterica subsp. diarizonae strain FDA0000223459204.52wgspatric59204
66792Salmonella enterica subsp. diarizonae strain FDA0000223559204.53wgspatric59204
66792Salmonella enterica subsp. diarizonae strain FMA013259204.50wgspatric59204
66792Salmonella enterica subsp. diarizonae strain HZS15459204.19completepatric59204
66792Salmonella enterica subsp. diarizonae strain NCTC1006059204.31wgspatric59204
66792Salmonella enterica subsp. diarizonae strain NCTC1038159204.26completepatric59204
66792Salmonella enterica subsp. diarizonae strain NCTC1241759204.58wgspatric59204
66792Salmonella enterica subsp. diarizonae strain SBO1359204.46wgspatric59204
66792Salmonella enterica subsp. diarizonae strain SBO2759204.45wgspatric59204

External links

@ref: 5575

culture collection no.: CCUG 30040, DSM 14847, ATCC 43973, CIP 82.31, NCTC 10060

straininfo link

@refpassport
20218http://www.straininfo.net/strains/303757
20218http://www.straininfo.net/strains/121312
20218http://www.straininfo.net/strains/229996
20218http://www.straininfo.net/strains/121315

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5575Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14847)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14847
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40232Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11301
49870Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30040)https://www.ccug.se/strain?id=30040
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)