Salmonella enterica subsp. diarizonae (CCUG 30040, DSM 14847, ATCC 43973)

Name: Salmonella enterica subsp. diarizonae (CCUG 30040, DSM 14847, ATCC 43973)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5128

Type strain

Culture col. no. CCUG 30040 DSM 14847 ATCC 43973 CIP 82.31 NCTC 10060

NCBI tax ID(s) 59204

Special Collections DSMZ CCUG CIP

History <- Collection des Bactéries de l' Institut Pasteur; CIP 82.31 <- L. Le Minor; 1982, L. Le Minor, Inst. Pasteur, Paris, France, Salmonella choleraesuis subsp. diarizonae CIP <- 1982, L. Le Minor, Inst. Pasteur, Paris, France: strain Salmonella choleraesuis subsp. diarizonae

Links

Salmonella enterica subsp. diarizonae CCUG 30040 is a Gram-negative, motile, rod-shaped bacterium of the family Enterobacteriaceae.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 45180

ATCC 43973,NCTC 10060,CCUG 30040,CIP 8231,DSM 14847,NCTC 12417,CIP 82.31

@ref 20215

Last LPSN update 2026-02-09 11:18:53

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Salmonella

Species Salmonella enterica subsp. diarizonae

Full scientific name Salmonella enterica subsp. diarizonae (Le Minor et al. 1985) Le Minor and Popoff 1987

Synonyms (2)

Salmonella choleraesuis subsp. diarizonae
"Salmonella diarizonae"

BacDive ID	Other strains from **Salmonella enterica subsp. diarizonae** (6)	Type strain
146104	S. enterica subsp. diarizonae CCUG 30388
146105	S. enterica subsp. diarizonae CCUG 30389
146106	S. enterica subsp. diarizonae CCUG 30390
146107	S. enterica subsp. diarizonae CCUG 30391
146108	S. enterica subsp. diarizonae CCUG 30392
156619	S. enterica subsp. diarizonae CCUG 63589

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119039	negative	rod-shaped
125438	negative		100
125439	negative		94.2

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5575	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5575	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
5575	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
40232	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
119039	CIP Medium 72	Medium recipe at CIP
119039	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5575	positive	growth	30
40232	positive	growth	30
49870	positive	growth	30

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68374	29016 ChEBI	arginine	+	hydrolysis	from API ID32E
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	+	builds acid from	from API ID32E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68374	16899 ChEBI	D-mannitol	+	builds acid from	from API ID32E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68374	30849 ChEBI	L-arabinose	+	builds acid from	from API ID32E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	+	builds acid from	from API ID32E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68374	25094 ChEBI	lysine	+	degradation	from API ID32E
68368	25094 ChEBI	lysine	+	degradation	from API 20E
68374	15792 ChEBI	malonate	+	assimilation	from API ID32E
68374	17306 ChEBI	maltose	+	builds acid from	from API ID32E
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68374	18257 ChEBI	ornithine	+	degradation	from API ID32E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374		Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68374	30911 ChEBI	sorbitol	+	builds acid from	from API ID32E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68374	17992 ChEBI	sucrose	-	builds acid from	from API ID32E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68374	27082 ChEBI	trehalose	+	builds acid from	from API ID32E
68374	27897 ChEBI	tryptophan	-	energy source	from API ID32E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68374	35581 ChEBI	indole	from API ID32E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68374	35581 ChEBI	indole		-	from API ID32E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68374	alpha-galactosidase	+	3.2.1.22	from API ID32E
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68374	arginine dihydrolase	+	3.5.3.6	from API ID32E
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68374	beta-galactosidase	+	3.2.1.23	from API ID32E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68374	beta-glucosidase	-	3.2.1.21	from API ID32E
68374	beta-glucuronidase	+	3.2.1.31	from API ID32E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68374	L-aspartate arylamidase	-	3.4.11.21	from API ID32E
68374	lipase	+		from API ID32E
68374	lysine decarboxylase	+	4.1.1.18	from API ID32E
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68374	ornithine decarboxylase	+	4.1.1.17	from API ID32E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68374	urease	-	3.5.1.5	from API ID32E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
5575	+	+	+	+	+	+	-	-	-	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
49870	+	+	+	+	+	+	-	-	-	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
49870	+	+	+	-	-	-	-	+	-	-	+	+	-	-	+	+	-	-	+	+	-	+	-	-	+	+	+	-	-	+	-	-

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence EU014688 (>99% sequence identity) for Salmonella enterica from Microbeatlas

Aquatic Samples	2005
Soil Samples	1084
Animal Samples	23018
Plant Samples	1996
Total Samples	28103

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5575	2	Risk group (German classification) According to TRBA 466
119039	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	PDT000909608.1 assembly for Salmonella enterica subsp. diarizonae CCUG30040	contig	GCA_016030095	59204.138	8112365987	59204	63.85
66792	36005_B01 assembly for Salmonella enterica subsp. diarizonae NCTC10060	contig	GCA_900456375	59204.31	8116472913	59204	32.76

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5575	Salmonella enterica subsp. diarizonae strain DSM 14847 16S ribosomal RNA gene, partial sequence	EU014688	1368		59204

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salmonella enterica subsp. diarizonae NCTC10060
NCBI: GCA_900456375

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.10	no
125439	motility	BacteriaNetⓘ	yes	77.60	no
125439	gram_stain	BacteriaNetⓘ	negative	94.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	86.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salmonella enterica subsp. diarizonae strain NCTC10060
PATRIC: 59204.31

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	94.88	no
125438	spore-forming	spore-formingⓘ	no	87.53	no
125438	aerobic	aerobicⓘ	no	69.06	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	75.75	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	An evaluation of the species and subspecies of the genus Salmonella with whole genome sequence data: Proposal of type strains and epithets for novel S. enterica subspecies VII, VIII, IX, X and XI.	Pearce ME, Langridge GC, Lauer AC, Grant K, Maiden MCJ, Chattaway MA.	Genomics	10.1016/j.ygeno.2021.07.003	2021
	Isolation of Salmonella from ready-to-eat poultry meat and evaluation of its survival at low temperature, microwaving and simulated gastric fluids.	Akbar A, Anal AK.	J Food Sci Technol	10.1007/s13197-014-1354-2	2015
	Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes.	Bae JW, Rhee SK, Nam YD, Park YH.	Nucleic Acids Res	10.1093/nar/gni112	2005
	Novel Heptaplex PCR-Based Diagnostics for Enteric Fever Caused by Typhoidal Salmonella Serovars and Its Applicability in Clinical Blood Culture.	Kim HJ, Jung Y, Kim MJ, Kim HY.	J Microbiol Biotechnol	10.4014/jmb.2307.07031	2023
Genetics	Real-Time PCR Method for the Rapid Detection and Quantification of Pathogenic Staphylococcus Species Based on Novel Molecular Target Genes.	Kim E, Yang SM, Won JE, Kim DY, Kim DS, Kim HY.	Foods	10.3390/foods10112839	2021
Metabolism	Receptor diversity and host interaction of bacteriophages infecting Salmonella enterica serovar Typhimurium.	Shin H, Lee JH, Kim H, Choi Y, Heu S, Ryu S.	PLoS One	10.1371/journal.pone.0043392	2012
Phylogeny	Comparison of Salmonella enterica serovar Typhimurium LT2 and non-LT2 salmonella genomic sequences, and genotyping of salmonellae by using PCR.	Kim HJ, Park SH, Kim HY.	Appl Environ Microbiol	10.1128/aem.00138-06	2006
Biotechnology	Detection of Salmonella spp. in oysters by PCR.	Bej AK, Mahbubani MH, Boyce MJ, Atlas RM.	Appl Environ Microbiol	10.1128/aem.60.1.368-373.1994	1994
	PCR amplification of the fimA gene sequence of Salmonella typhimurium, a specific method for detection of Salmonella spp.	Cohen HJ, Mechanda SM, Lin W.	Appl Environ Microbiol	10.1128/aem.62.12.4303-4308.1996	1996
Genetics	Comprehensive blueprint of Salmonella genomic plasticity identifies hotspots for pathogenicity genes.	Krishnakant Kushwaha S, Wu Y, Leonardo Avila H, Anand A, Sicheritz-Ponten T, Millard A, Amol Marathe S, Nobrega FL.	PLoS Biol	10.1371/journal.pbio.3002746	2024
Phylogeny	Mangrovibacter phragmitis sp. nov., an endophyte isolated from the roots of Phragmites karka.	Behera P, Venkata Ramana V, Maharana B, Joseph N, Vaishampayan P, Singh NK, Shouche Y, Bhadury P, Mishra SR, Raina V, Suar M, Pattnaik AK, Rastogi G	Int J Syst Evol Microbiol	10.1099/ijsem.0.001789	2017
Phylogeny	Mangrovibacter yixingensis sp. nov., isolated from farmland soil.	Zhang H, Guo SH, Sun B, Zhang J, Cheng MG, Li Q, Hong Q, Huang X	Int J Syst Evol Microbiol	10.1099/ijs.0.000281	2015

References

#5575	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14847
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40232	; Curators of the CIP;
#49870	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30040
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68374	Automatically annotated from API ID32E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119039	Collection of Institut Pasteur ; Curators of the CIP; CIP 82.31
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salmonella enterica subsp. diarizonae (CCUG 30040, DSM 14847, ATCC 43973)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API ID32E

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016030095

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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