Strain identifier

BacDive ID: 5110

Type strain: No

Species: Salmonella enterica subsp. enterica

Strain Designation: 16

Strain history: <- ATCC <- P.R. Edwards (Salmonella sp.) <- Int. Salmonella Center; 16

NCBI tax ID(s): 59201 (subspecies)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3562

BacDive-ID: 5110

DSM-Number: 9379

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Salmonella enterica subsp. enterica 16 is a mesophilic bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 59201
  • Matching level: subspecies

strain history

  • @ref: 3562
  • history: <- ATCC <- P.R. Edwards (Salmonella sp.) <- Int. Salmonella Center; 16

doi: 10.13145/bacdive5110.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica subsp. enterica
  • full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
  • synonyms

    • @ref: 20215
    • synonym: Salmonella choleraesuis subsp. choleraesuis

@ref: 3562

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. enterica

full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

strain designation: 16

type strain: no

Culture and growth conditions

culture medium

  • @ref: 3562
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 3562
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
3562-+++++---+-+++++-+-+-

Isolation, sampling and environmental information

isolation

  • @ref: 3562
  • geographic location: Heidelberg
  • country: Germany
  • origin.country: DEU
  • continent: Europe

taxonmaps

  • @ref: 69479
  • File name: preview.99_9.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_8;99_9&stattab=map
  • Last taxonomy: Salmonella enterica
  • 16S sequence: JQ228521
  • Sequence Identity:
  • Total samples: 28103
  • soil counts: 1084
  • aquatic counts: 2005
  • animal counts: 23018
  • plant counts: 1996

Safety information

risk assessment

  • @ref: 3562
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Salmonella enterica subsp. enterica serovar Heidelberg strain ATCC 8326 16S ribosomal RNA gene, partial sequence
  • accession: JQ228521
  • length: 1334
  • database: ena
  • NCBI tax ID: 611

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica subsp. enterica serovar Typhi 16GCA_003005885contigncbi90370
66792Salmonella enterica subsp. enterica serovar Anatum 16GCA_003117635contigncbi58712

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes53.3no
gram-positiveno98.551no
anaerobicno91.279no
aerobicyes69.621no
halophileno93.908no
spore-formingno93.804no
glucose-utilyes92.551no
thermophileno98.656yes
motileyes90.924no
glucose-fermentyes93.521yes

External links

@ref: 3562

culture collection no.: DSM 9379, ATCC 8326

straininfo link

  • @ref: 74603
  • straininfo: 34941

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology23571354Reduction of Salmonella in skinless chicken breast fillets by lauric arginate surface application.Sharma CS, Ates A, Joseph P, Nannapaneni R, Kiess APoult Sci10.3382/ps.2012-028372013Animals, Anti-Bacterial Agents/*pharmacology, Arginine/*analogs & derivatives/pharmacology, Bacteria/drug effects/growth & development/isolation & purification, Chickens, Food Contamination/*prevention & control, Food Handling/*methods, Meat/*microbiology/*standards, Pectoralis Muscles/physiology, Salmonella/*drug effects/growth & development/isolation & purificationPhylogeny
Stress30586327Effect of Chlorine-Induced Sublethal Oxidative Stress on the Biofilm-Forming Ability of Salmonella at Different Temperatures, Nutrient Conditions, and Substrates.Dhakal J, Sharma CS, Nannapaneni R, McDANIEL CD, Kim T, Kiess AJ Food Prot10.4315/0362-028X.JFP-18-1192019Biofilms/*growth & development, *Chlorine/pharmacology, Colony Count, Microbial, *Nutrients, *Oxidative Stress, Salmonella/*physiology, Stainless Steel, Temperature
31827464Rugose Morphotype in Salmonella Typhimurium and Salmonella Heidelberg Induced by Sequential Exposure to Subinhibitory Sodium Hypochlorite Aids in Biofilm Tolerance to Lethal Sodium Hypochlorite on Polystyrene and Stainless Steel Surfaces.Bansal M, Nannapaneni R, Kode D, Chang S, Sharma CS, McDaniel C, Kiess AFront Microbiol10.3389/fmicb.2019.027042019

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3562Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9379)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9379
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74603Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID34941.1StrainInfo: A central database for resolving microbial strain identifiers