Strain identifier

BacDive ID: 5104

Type strain: No

Species: Salmonella enterica subsp. enterica

Strain Designation: K 103

Strain history: CIP <- 2013, FX Weill, Inst.Pasteur, Paris, France: strain IP 103K <- 1940, F. Kauffmann, Copenhagen, Denmark: strain K 103

NCBI tax ID(s): 59201 (subspecies)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.3 (current version):
version 9.2:
version 9.1:
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.3 (current version)

General

@ref: 1620

BacDive-ID: 5104

DSM-Number: 4224

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Salmonella enterica subsp. enterica K 103 is a mesophilic, Gram-negative, motile bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 59201
  • Matching level: subspecies

strain history

@refhistory
1620<- CIP; CIP 80.39 <- F. Kauffman;
119046CIP <- 2013, FX Weill, Inst.Pasteur, Paris, France: strain IP 103K <- 1940, F. Kauffmann, Copenhagen, Denmark: strain K 103

doi: 10.13145/bacdive5104.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica subsp. enterica
  • full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

  • synonyms

    • @ref: 20215
    • synonym: Salmonella choleraesuis subsp. choleraesuis

@ref: 1620

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. enterica

full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

strain designation: K 103

type strain: no

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
119046negativerod-shapedyes
125439negative96.6
125438negative100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1620NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36264MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
1620TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
1620COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
119046CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
1620positivegrowth30
36264positivegrowth30
1620positivegrowth37

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: aerobe
  • confidence: 90.9

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 91.4

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
1620-+++++-----+++++-+-+-
1620-+++++-----+++++-+-+-

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
1620CopenhagenDenmarkDNKEurope55.676112.5683
1190461940

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
16202Risk group (German classification)
1190462Risk group (French classification)

Sequence information

16S sequences

  • @ref: 124043
  • description: Salmonella enterica subsp. enterica gene for 16S rRNA, partial sequence, strain: NBRC 100797.
  • accession: AB681241
  • length: 1467
  • database: nuccore
  • NCBI tax ID: 59201

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica subsp. enterica NCTC6017GCA_900635515completencbi59201
66792Salmonella enterica subsp. enterica strain NCTC601759201.2264completepatric59201

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno100no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no92.99no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no75.674no
125438spore-formingspore-formingAbility to form endo- or exosporesno89.146no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno99yes
125438motile2+flagellatedAbility to perform flagellated movementyes74.39no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno91.4
125439BacteriaNetmotilityAbility to perform movementyes73.4
125439BacteriaNetgram_stainReaction to gram-stainingnegative96.6
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthaerobe90.9

External links

@ref: 1620

culture collection no.: DSM 4224, CIP 80.39, NCTC 6017, WDCM 00029, CIP 110658, NBRC 100797, CCM 4518, CCUG 20832, CCUG 21354, LMG 18222, CECT 545, CMCC (B) 50094, IP 103K

straininfo link

  • @ref: 74598
  • straininfo: 11470

literature

  • topic: Phylogeny
  • Pubmed-ID: 33451155
  • title: Dual Inhibition of Salmonella enterica and Clostridium perfringens by New Probiotic Candidates Isolated from Chicken Intestinal Mucosa.
  • authors: Lone A, Mottawea W, Ait Chait Y, Hammami R
  • journal: Microorganisms
  • DOI: 10.3390/microorganisms9010166
  • year: 2021

Reference

@idauthorscataloguedoi/urltitle
1620Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4224)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4224
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36264Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30462
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
74598Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11470.1StrainInfo: A central database for resolving microbial strain identifiers
119046Curators of the CIPCollection of Institut Pasteur (CIP 110658)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110658
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1