Strain identifier
BacDive ID: 5104
Type strain:
Species: Salmonella enterica subsp. enterica
Strain Designation: K 103
Strain history: CIP <- 2013, FX Weill, Inst.Pasteur, Paris, France: strain IP 103K <- 1940, F. Kauffmann, Copenhagen, Denmark: strain K 103
NCBI tax ID(s): 59201 (subspecies)
General
@ref: 1620
BacDive-ID: 5104
DSM-Number: 4224
keywords: genome sequence, Bacteria, mesophilic, motile
description: Salmonella enterica subsp. enterica K 103 is a mesophilic, motile bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 59201
- Matching level: subspecies
strain history
@ref | history |
---|---|
1620 | <- CIP <- F. Kaufmann |
119046 | CIP <- 2013, FX Weill, Inst.Pasteur, Paris, France: strain IP 103K <- 1940, F. Kauffmann, Copenhagen, Denmark: strain K 103 |
doi: 10.13145/bacdive5104.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Salmonella
- species: Salmonella enterica subsp. enterica
- full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
synonyms
- @ref: 20215
- synonym: Salmonella choleraesuis subsp. choleraesuis
@ref: 1620
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella enterica subsp. enterica
full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
strain designation: K 103
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 96.013 | ||
69480 | 99.994 | negative | ||
119046 | yes | negative | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
1620 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
36264 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
1620 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
1620 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
119046 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1620 | positive | growth | 30 | mesophilic |
36264 | positive | growth | 30 | mesophilic |
1620 | positive | growth | 37 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 98 |
69480 | no | 99.907 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1620 | - | + | + | + | + | + | - | - | - | - | - | + | + | + | + | + | - | + | - | + | - |
1620 | - | + | + | + | + | + | - | - | - | - | - | + | + | + | + | + | - | + | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | latitude | longitude | isolation date |
---|---|---|---|---|---|---|---|
1620 | Copenhagen | Denmark | DNK | Europe | 55.6761 | 12.5683 | |
119046 | 1940 |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
1620 | 2 | Risk group (German classification) |
119046 | 2 | Risk group (French classification) |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Salmonella enterica subsp. enterica NCTC6017 | GCA_900635515 | complete | ncbi | 59201 |
66792 | Salmonella enterica subsp. enterica strain NCTC6017 | 59201.2264 | complete | patric | 59201 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 98 | no |
flagellated | no | 50.919 | no |
gram-positive | no | 98.775 | no |
anaerobic | no | 90.931 | no |
aerobic | yes | 70.773 | no |
halophile | no | 92.483 | no |
spore-forming | no | 94.303 | no |
thermophile | no | 99.122 | yes |
glucose-util | yes | 93.446 | no |
motile | yes | 89.769 | no |
glucose-ferment | yes | 93.491 | yes |
External links
@ref: 1620
culture collection no.: DSM 4224, CIP 80.39, NCTC 6017, WDCM 00029, CIP 110658, NBRC 100797, CCM 4518, CCUG 20832, CCUG 21354, LMG 18222, CECT 545, CMCC (B) 50094, IP 103K
straininfo link
- @ref: 74598
- straininfo: 11470
literature
- topic: Phylogeny
- Pubmed-ID: 33451155
- title: Dual Inhibition of Salmonella enterica and Clostridium perfringens by New Probiotic Candidates Isolated from Chicken Intestinal Mucosa.
- authors: Lone A, Mottawea W, Ait Chait Y, Hammami R
- journal: Microorganisms
- DOI: 10.3390/microorganisms9010166
- year: 2021
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
1620 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4224) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4224 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
36264 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/30462 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68368 | Automatically annotated from API 20E | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
74598 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID11470.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
119046 | Curators of the CIP | Collection of Institut Pasteur (CIP 110658) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110658 |