Strain identifier

BacDive ID: 5069

Type strain: Yes

Species: Proteus vulgaris

Strain Designation: PR 1

Strain history: CIP <- 1996, ATCC <- CDC: strain PR 1

NCBI tax ID(s): 585 (species)

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General

@ref: 5020

BacDive-ID: 5069

DSM-Number: 13387

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, rod-shaped, antibiotic resistance

description: Proteus vulgaris PR 1 is a facultative anaerobe, mesophilic, Gram-negative bacterium that has multiple antibiotic resistances.

NCBI tax id

  • NCBI tax id: 585
  • Matching level: species

strain history

@refhistory
5020<- ATCC; ATCC 29905 <- CDC, Atlanta; CDC PR1
123892CIP <- 1996, ATCC <- CDC: strain PR 1

doi: 10.13145/bacdive5069.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Proteus
  • species: Proteus vulgaris
  • full scientific name: Proteus vulgaris Hauser 1885 (Approved Lists 1980)

@ref: 5020

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Morganellaceae

genus: Proteus

species: Proteus vulgaris

full scientific name: Proteus vulgaris Hauser 1885 emend. Judicial Commission 1999

strain designation: PR 1

type strain: yes

Morphology

cell morphology

  • @ref: 123892
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5020COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5020CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
41746MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
123892CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
123892CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
5020positivegrowth37mesophilic
41746positivegrowth30mesophilic
123892positivegrowth30-37mesophilic
123892nogrowth5psychrophilic
123892nogrowth10psychrophilic
123892nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 123892
  • oxygen tolerance: facultative anaerobe

antibiogram

  • @ref: 5020
  • medium: Mueller-Hinton Agar
  • Penicillin G: 8
  • oxacillin: 0
  • ampicillin: 16-18
  • ticarcillin: 32
  • mezlocillin: 36
  • cefalotin: 16
  • cefazolin: 12
  • cefotaxime: 46
  • aztreonam: 46
  • imipenem: 34
  • tetracycline: 18
  • chloramphenicol: 32-34
  • gentamycin: 24
  • amikacin: 28
  • vancomycin: 0
  • erythromycin: 8
  • lincomycin: 8
  • ofloxacin: 40
  • norfloxacin: 42
  • colistin: 0
  • pipemidic acid: 28
  • nitrofurantoin: 10
  • bacitracin: 0
  • polymyxin b: 8
  • kanamycin: 26
  • neomycin: 22
  • doxycycline: 24
  • ceftriaxone: 42
  • clindamycin: 10
  • fosfomycin: 34
  • moxifloxacin: 34-36
  • linezolid: 14
  • nystatin: 12-14
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 42

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea+hydrolysis
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
12389229864mannitol+fermentation
12389216947citrate-carbon source
12389217234glucose-fermentation
12389217716lactose-fermentation
12389217632nitrate+reduction
12389216301nitrite-reduction
12389215792malonate-assimilation
123892132112sodium thiosulfate+builds gas from
12389217234glucose+degradation

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideyes
12389235581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin-
6836835581indole+
12389215688acetoin-
12389217234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
123892oxidase-
123892beta-galactosidase-3.2.1.23
123892alcohol dehydrogenase-1.1.1.1
123892gelatinase-
123892catalase+1.11.1.6
123892lysine decarboxylase-4.1.1.18
123892ornithine decarboxylase-4.1.1.17
123892phenylalanine ammonia-lyase+4.3.1.24
123892tryptophan deaminase+
123892urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123892-++--+----++---++---

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
5020----+++++--+----+-+--
5020----+++++--+----+-+--
5020-----++++--+----+-+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123892++++---+-++------+++-++--------+--++-----+-------+---+--+-+++--------------+--+++--------+++-++---+

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_739.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_12;97_12;98_14;99_739&stattab=map
  • Last taxonomy: Proteus
  • 16S sequence: LN681563
  • Sequence Identity:
  • Total samples: 89
  • soil counts: 4
  • aquatic counts: 10
  • animal counts: 74
  • plant counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
50202Risk group (German classification)
1238922Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Proteus vulgaris strain ATCC 29905 16S ribosomal RNA gene, partial sequenceDQ8852571478ena585
5020Proteus vulgaris partial 16S rRNA gene, type strain DSM 13387THE9782681533ena585
5020Proteus vulgaris partial 16S rRNA gene, type strain DSM 13387TLN6815631495ena585

External links

@ref: 5020

culture collection no.: DSM 13387, ATCC 29905, CDC PR1, CIP 104989, PCM 2668

straininfo link

  • @ref: 74564
  • straininfo: 389518

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny7050147Identification of Proteus penneri sp. nov., formerly known as Proteus vulgaris indole negative or as Proteus vulgaris biogroup 1.Hickman FW, Steigerwalt AG, Farmer JJ 3rd, Brenner DJJ Clin Microbiol10.1128/jcm.15.6.1097-1102.19821982Anti-Bacterial Agents/pharmacology, Base Composition, Cytosine/analysis, DNA, Bacterial/analysis, Guanine/analysis, Indoles/metabolism, Nucleic Acid Hybridization, Proteus/*classification/physiology, Proteus vulgaris/classification, Terminology as TopicMetabolism
Pathogenicity7547312Replacement of NCTC 4175, the current type strain of Proteus vulgaris, with ATCC 29905. Request for an opinion.Brenner DJ, Hickman-Brenner FW, Holmes B, Hawkey PM, Penner JL, Grimont PA, O'Hara CMInt J Syst Bacteriol10.1099/00207713-45-4-8701995DNA, Bacterial/chemistry, Humans, Proteus vulgaris/*classification/geneticsPhylogeny
Phylogeny10449462Molecular characterization of the genera Proteus, Morganella, and Providencia by ribotyping.Pignato S, Giammanco GM, Grimont F, Grimont PA, Giammanco GJ Clin Microbiol10.1128/JCM.37.9.2840-2847.19991999*Bacterial Typing Techniques, DNA, Ribosomal/*analysis, Humans, Nucleic Acid Hybridization, Proteus/*classification, Providencia/*classification, Restriction MappingPathogenicity
Phylogeny11034498Classification of Proteus vulgaris biogroup 3 with recognition of Proteus hauseri sp. nov., nom. rev. and unnamed Proteus genomospecies 4, 5 and 6.O'Hara CM, Brenner FW, Steigerwalt AG, Hill BC, Holmes B, Grimont PA, Hawkey PM, Penner JL, Miller JM, Brenner DJInt J Syst Evol Microbiol10.1099/00207713-50-5-18692000Anti-Bacterial Agents/pharmacology, Bacterial Proteins/analysis, Bacterial Typing Techniques, DNA, Bacterial/chemistry/genetics, Electrophoresis/methods, Genome, Bacterial, Humans, Microbial Sensitivity Tests, Nucleic Acid Hybridization, Nucleic Acids, Phenotype, Proteus/*classification/drug effects/genetics/physiology, Proteus Infections/*microbiology, Proteus vulgaris/*classification/drug effects/genetics/physiologyPathogenicity
Phylogeny29297845Proteus columbae sp. nov., isolated from a pigeon in Ma'anshan, China.Dai H, Wang Y, Fang Y, Xiao T, Huang Z, Kan B, Wang DInt J Syst Evol Microbiol10.1099/ijsem.0.0025412018Animals, Bacterial Typing Techniques, Base Composition, China, Columbidae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Nucleic Acid Hybridization, *Phylogeny, Proteus/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny29509133Proteus alimentorum sp. nov., isolated from pork and lobster in Ma'anshan city, China.Dai H, Wang Y, Fang Y, Huang Z, Kan B, Wang DInt J Syst Evol Microbiol10.1099/ijsem.0.0026892018Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nephropidae, Nucleic Acid Hybridization, *Phylogeny, Proteus/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Red Meat/*microbiology, Seafood/*microbiology, Sequence Analysis, DNA, SwineTranscriptome
Pathogenicity29530530Membrane-acting bacteriocin purified from a soil isolate Pediococcus pentosaceus LB44 shows broad host-range.Kaur R, Tiwari SKBiochem Biophys Res Commun10.1016/j.bbrc.2018.03.0622018Amino Acid Sequence, Anti-Bacterial Agents/chemistry/*isolation & purification/*pharmacology, Bacteria/*drug effects, Bacterial Infections/drug therapy, Bacteriocins/chemistry/*isolation & purification/*pharmacology, Food Microbiology, Halobacteriaceae/drug effects, Humans, Pediococcus pentosaceus/*chemistry, Soil MicrobiologyEnzymology
36263957LC-MS profile, in vitro acetylcholinesterase inhibitory, antibacterial and hemostatic properties of Ranunculus bullatus extract.Lemoui R, Cheriet T, Kahlouche F, Noman L, Seghiri R, Abudunia ANat Prod Res10.1080/14786419.2022.21366612022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5020Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13387)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13387
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41746Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16958
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74564Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389518.1StrainInfo: A central database for resolving microbial strain identifiers
123892Curators of the CIPCollection of Institut Pasteur (CIP 104989)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104989