Strain identifier
BacDive ID: 5053
Type strain: 
Species: Photorhabdus stackebrandtii
Strain Designation: GPS11
Strain history: <- P. S. Grewal, Entomology Dept., Ohio State Univ., USA; GPS11 <- R. An and P. S. Grewal
NCBI tax ID(s): 1123042 (species)
version 8.1 (current version)
General
@ref: 16771
BacDive-ID: 5053
DSM-Number: 23271
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, animal pathogen
description: Photorhabdus stackebrandtii GPS11 is a mesophilic, motile animal pathogen that was isolated from nematode Heterorhabditis bacteriophora.
NCBI tax id
- NCBI tax id: 1123042
- Matching level: species
strain history
- @ref: 16771
- history: <- P. S. Grewal, Entomology Dept., Ohio State Univ., USA; GPS11 <- R. An and P. S. Grewal
doi: 10.13145/bacdive5053.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Morganellaceae
- genus: Photorhabdus
- species: Photorhabdus stackebrandtii
- full scientific name: Photorhabdus stackebrandtii (An and Grewal 2011) Machado et al. 2018
synonyms
- @ref: 20215
- synonym: Photorhabdus temperata subsp. stackebrandtii
@ref: 16771
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Morganellaceae
genus: Photorhabdus
species: Photorhabdus stackebrandtii
full scientific name: Photorhabdus stackebrandtii (An and Grewal 2011) Machado et al. 2018
strain designation: GPS11
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.902 | |
| 69480 | 99.926 | negative |
multimedia
- @ref: 16771
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_23271.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 16771
- name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535b
- composition: Name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water
culture temp
- @ref: 16771
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.73 |
Isolation, sampling and environmental information
isolation
- @ref: 16771
- sample type: nematode Heterorhabditis bacteriophora
- host species: Heterorhabditis bacteriophora
- geographic location: Ohio
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Nematoda
Safety information
risk assessment
- @ref: 16771
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16771
- description: Photorhabdus temperata subsp. stackebrandtii strain GPS11 16S ribosomal RNA gene, partial sequence
- accession: EF467859
- length: 1370
- database: ena
- NCBI tax ID: 1123042
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Photorhabdus stackebrandtii DSM 23271 | GCA_011189495 | scaffold | ncbi | 1123042 |
| 66792 | Photorhabdus stackebrandtii strain DSM 23271 | 1123042.3 | wgs | patric | 1123042 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 88.259 | no |
| flagellated | yes | 64.583 | no |
| gram-positive | no | 98.294 | no |
| anaerobic | no | 98.054 | no |
| aerobic | yes | 87.441 | no |
| halophile | no | 87.393 | no |
| spore-forming | no | 93.966 | no |
| thermophile | no | 97.949 | no |
| glucose-util | yes | 91.955 | no |
| glucose-ferment | yes | 85.664 | no |
External links
@ref: 16771
culture collection no.: DSM 23271, ATCC BAA 2077
straininfo link
- @ref: 74548
- straininfo: 406968
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16771 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23271) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23271 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 74548 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406968.1 | StrainInfo: A central database for resolving microbial strain identifiers |