Photorhabdus stackebrandtii (DSM 23271, ATCC BAA-2077, GPS11)

Name: Photorhabdus stackebrandtii (DSM 23271, ATCC BAA-2077, GPS11)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5053

Type strain

Strain Designation GPS11

Culture col. no. DSM 23271 ATCC BAA-2077 GPS11

NCBI tax ID(s) 1123042

Special Collections DSMZ

History DSMZ <- P. S. Grewal, Entomology Dept., Ohio State Univ., USA; GPS11 <- R. An and P. S. Grewal

Links

Photorhabdus stackebrandtii GPS11 is an animal pathogen that was isolated from nematode Heterorhabditis bacteriophora.

animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406968

ATCC BAA-2077,DSM 23271

@ref 20215

Last LPSN update 2026-05-29 08:26:04

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Morganellaceae

Genus Photorhabdus

Species Photorhabdus stackebrandtii

Full scientific name Photorhabdus stackebrandtii (An and Grewal 2011) Machado et al. 2018

Synonyms (1)

Photorhabdus temperata subsp. stackebrandtii

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100
125439	negative	97.42

Multimedia

@ref:	16771
multimedia content:	DSM_23271.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_23271.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16771	REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16771	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.914
125438		92.871

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Nematoda

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
16771	nematode Heterorhabditis bacteriophora	Heterorhabditis bacteriophora	Ohio	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
16771		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1118949v1 assembly for Photorhabdus stackebrandtii DSM 23271	scaffold	GCA_011189495	1123042.3	8067865759	1123042	31.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16771	Photorhabdus temperata subsp. stackebrandtii strain GPS11 16S ribosomal RNA gene, partial sequence	EF467859	1370		1123042
124043	Photorhabdus stackebrandtii strain DSM 23271 16S ribosomal RNA gene, partial sequence.	MK039075	1349		1123042

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1118949v1 assembly for Photorhabdus stackebrandtii DSM 23271
NCBI: GCA_011189495

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	63.89	no
125439	gram_stain	BacteriaNetⓘ	negative	97.42	no
125439	motility	BacteriaNetⓘ	yes	49.64	no
125439	spore_formation	BacteriaNetⓘ	no	99.91	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Photorhabdus stackebrandtii DSM 23271
NCBI: GCA_011189495.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	98.67	no
125438	aerobic	aerobicⓘ	no	70.29	no
125438	spore-forming	spore-formingⓘ	no	92.87	no
125438	thermophilic	thermophileⓘ	no	98.47	yes
125438	flagellated	motile2+ⓘ	yes	71.46	no

Literature

Title	Authors	Journal	DOI	Year
Computational identification of a systemic antibiotic for gram-negative bacteria.	Miller RD, Iinishi A, Modaresi SM, Yoo BK, Curtis TD, Lariviere PJ, Liang L, Son S, Nicolau S, Bargabos R, Morrissette M, Gates MF, Pitt N, Jakob RP, Rath P, Maier T, Malyutin AG, Kaiser JT, Niles S, Karavas B, Ghiglieri M, Bowman SEJ, Rees DC, Hiller S, Lewis K.	Nat Microbiol	10.1038/s41564-022-01227-4	2022

References

#16771	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23271
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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About us

Photorhabdus stackebrandtii (DSM 23271, ATCC BAA-2077, GPS11)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_011189495

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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