Strain identifier

BacDive ID: 5021

Type strain: No

Species: Pectobacterium atrosepticum

Strain Designation: 33-1/1

Strain history: <- DSM 60336 (Erwinia atroseptica) <- L.W. Webb <- J. Duben, 33-1/1

NCBI tax ID(s): 29471 (species)

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General

@ref: 9189

BacDive-ID: 5021

DSM-Number: 30186

keywords: Bacteria, mesophilic, plant pathogen

description: Pectobacterium atrosepticum 33-1/1 is a mesophilic plant pathogen that was isolated from Solanum tuberosum "Maritta", soft rot of potato tuber.

NCBI tax id

  • NCBI tax id: 29471
  • Matching level: species

strain history

  • @ref: 9189
  • history: <- DSM 60336 (Erwinia atroseptica) <- L.W. Webb <- J. Duben, 33-1/1

doi: 10.13145/bacdive5021.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Pectobacteriaceae
  • genus: Pectobacterium
  • species: Pectobacterium atrosepticum
  • full scientific name: Pectobacterium atrosepticum (van Hall 1902) Gardan et al. 2003

  • synonyms

    @refsynonym
    20215Bacillus atrosepticus
    20215Erwinia carotovora subsp. atroseptica
    20215Pectobacterium carotovorum subsp. atrosepticum

@ref: 9189

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Pectobacteriaceae

genus: Pectobacterium

species: Pectobacterium atrosepticum

full scientific name: Pectobacterium atrosepticum (van Hall 1902) Gardan et al. 2003

strain designation: 33-1/1

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9189CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
9189GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54)yeshttps://mediadive.dsmz.de/medium/54Name: GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54) Composition: CaCO3 20.0 g/l Glucose 20.0 g/l Agar 17.0 g/l Yeast extract 10.0 g/l Distilled water
9189TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
9189YPGA (DSMZ Medium 1015)yeshttps://mediadive.dsmz.de/medium/1015Name: YPGA (DSMZ Medium 1015) Composition: Agar 15.0 g/l Glucose 7.0 g/l Bacto peptone 7.0 g/l Yeast extract 7.0 g/l Distilled water

culture temp

  • @ref: 9189
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
9189+---+----+-+++-+++++-+-

Isolation, sampling and environmental information

isolation

  • @ref: 9189
  • sample type: Solanum tuberosum "Maritta", soft rot of potato tuber
  • host species: Solanum tuberosum

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Decomposing plant
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

Safety information

risk assessment

  • @ref: 9189
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

External links

@ref: 9189

culture collection no.: DSM 30186, DSM 60336

straininfo link

  • @ref: 74516
  • straininfo: 49706

Reference

@idauthorscataloguedoi/urltitle
9189Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30186)https://www.dsmz.de/collection/catalogue/details/culture/DSM-30186
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68368Automatically annotated from API 20E
74516Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49706.1StrainInfo: A central database for resolving microbial strain identifiers