Pectobacterium atrosepticum 33-1/1 is a plant pathogen that was isolated from Solanum tuberosum "Maritta", soft rot of potato tuber.
plant pathogen Bacteria| @ref 20215 |
Last LPSN update
2026-05-29 08:26:04 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Pectobacteriaceae |
| Genus Pectobacterium |
| Species Pectobacterium atrosepticum |
| Full scientific name Pectobacterium atrosepticum (van Hall 1902) Gardan et al. 2003 |
| Synonyms (3) |
| BacDive ID | Other strains from Pectobacterium atrosepticum (4) | Type strain |
|---|---|---|
| 5018 | P. atrosepticum G/39, G39, DSM 18077, ATCC 33260, CFBP 1526, ... (type strain) | |
| 5019 | P. atrosepticum 33-4/1, DSM 30184, DSM 60108 | |
| 5020 | P. atrosepticum 34-1/1, DSM 30185 | |
| 130948 | P. atrosepticum M37, DSM 23895 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9189 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive  | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 9189 | GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54) | Medium recipe at MediaDive | Name: GLUCOSE YEAST EXTRACT MEDIUM (DSMZ Medium 54) Composition: CaCO3 20.0 g/l Glucose 20.0 g/l Agar 17.0 g/l Yeast extract 10.0 g/l Distilled water | ||
| 9189 | TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) | Medium recipe at MediaDive | Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water | ||
| 9189 | YPGA (DSMZ Medium 1015) | Medium recipe at MediaDive | Name: YPGA (DSMZ Medium 1015) Composition: Agar 15.0 g/l Glucose 7.0 g/l Bacto peptone 7.0 g/l Yeast extract 7.0 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 9189 | positive | growth | 28 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | + | fermentation | from API 20E |
| 68368 | 17632 ChEBI | nitrate | + | reduction | from API 20E |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | + | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68368 | gelatinase | - | from API 20E | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9189 | + | - | - | - | + | - | - | - | - | + | - | + | + | + | - | + | + | + | + | + | - | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
Phages| @ref | Name | Strain number | |
|---|---|---|---|
| 124042 | Pectobacterium phage vB_PatP_CB3 | DSM 30186 | |
| 124042 | Pectobacterium phage vB_PatP_CB4 | DSM 30186 | |
| 124042 | Pectobacterium phage vB_Patp_CB5 | DSM 30186 | |
| 124042 | Pectobacterium phage vB_PatP_CB7 | DSM 30186 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Isolation and Characterization of Pectobacterium Phage vB_PatM_CB7: New Insights into the Genus Certrevirus. | Buttimer C, Lynch C, Hendrix H, Neve H, Noben JP, Lavigne R, Coffey A. | Antibiotics (Basel) | 10.3390/antibiotics9060352 | 2020 | | |
| Phylogeny | Pectobacterium atrosepticum Phage vB_PatP_CB5: A Member of the Proposed Genus 'Phimunavirus'. | Buttimer C, Lucid A, Neve H, Franz CMAP, O'Mahony J, Turner D, Lavigne R, Coffey A. | Viruses | 10.3390/v10080394 | 2018 | |
| Phylogeny | Novel N4-Like Bacteriophages of Pectobacterium atrosepticum. | Buttimer C, Hendrix H, Lucid A, Neve H, Noben JP, Franz C, O'Mahony J, Lavigne R, Coffey A. | Pharmaceuticals (Basel) | 10.3390/ph11020045 | 2018 | |
| A Hundred Years of Bacteriophages: Can Phages Replace Antibiotics in Agriculture and Aquaculture? | Sieiro C, Areal-Hermida L, Pichardo-Gallardo A, Almuina-Gonzalez R, de Miguel T, Sanchez S, Sanchez-Perez A, Villa TG. | Antibiotics (Basel) | 10.3390/antibiotics9080493 | 2020 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive5021.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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