Strain identifier

BacDive ID: 5008

Type strain: Yes

Species: Pantoea anthophila

Strain Designation: BD 871

Strain history: <- T. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; BD 871

NCBI tax ID(s): 470931 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 16697

BacDive-ID: 5008

DSM-Number: 23080

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped, plant pathogen

description: Pantoea anthophila BD 871 is a facultative anaerobe, Gram-negative, motile plant pathogen that was isolated from Impatiens balsamina.

NCBI tax id

  • NCBI tax id: 470931
  • Matching level: species

strain history

  • @ref: 16697
  • history: <- T. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; BD 871

doi: 10.13145/bacdive5008.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Pantoea
  • species: Pantoea anthophila
  • full scientific name: Pantoea anthophila Brady et al. 2009

@ref: 16697

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Erwiniaceae

genus: Pantoea

species: Pantoea anthophila

full scientific name: Pantoea anthophila Brady et al. 2009

strain designation: BD 871

type strain: yes

Morphology

cell morphology

  • @ref: 29239
  • gram stain: negative
  • cell length: 1.2-2.5 µm
  • cell width: 0.9 µm
  • cell shape: rod-shaped
  • motility: yes

Physiology and metabolism

oxygen tolerance

  • @ref: 29239
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 29239
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2923916449alanine+carbon source
2923922599arabinose+carbon source
2923935391aspartate+carbon source
2923917057cellobiose+carbon source
2923916947citrate+carbon source
2923928757fructose+carbon source
2923928260galactose+carbon source
2923917234glucose+carbon source
2923929987glutamate+carbon source
2923917754glycerol+carbon source
2923928087glycogen+carbon source
2923915792malonate+carbon source
2923917306maltose+carbon source
2923929864mannitol+carbon source
2923937684mannose+carbon source
2923926271proline+carbon source
2923926546rhamnose+carbon source
2923933942ribose+carbon source
2923917822serine+carbon source
2923930031succinate+carbon source
2923917992sucrose+carbon source
2923927082trehalose+carbon source
2923953423tween 40+carbon source
2923953426tween 80+carbon source
2923918222xylose+carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 16697
  • sample type: Impatiens balsamina
  • host species: Impatiens balsamina
  • country: India
  • origin.country: IND
  • continent: Asia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_727.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_310;97_507;98_583;99_727&stattab=map
  • Last taxonomy: Pantoea ananatis
  • 16S sequence: FJ611809
  • Sequence Identity:
  • Total samples: 8803
  • soil counts: 845
  • aquatic counts: 764
  • animal counts: 5045
  • plant counts: 2149

Safety information

risk assessment

  • @ref: 16697
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pantoea anthophila strain LMG2558 16S ribosomal RNA gene, partial sequenceFJ6118091387ena470931
16697Pantoea anthophila strain LMG 2558 16S ribosomal RNA gene, partial sequenceEF6880101432ena470931

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pantoea anthophila LMG 2558GCA_006494375contigncbi470931
66792Pantoea anthophila strain LMG 2558470931.11wgspatric470931

GC content

@refGC-contentmethod
1669757.5high performance liquid chromatography (HPLC)
2923957.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno97.767yes
anaerobicno98.861yes
halophileno85.343no
spore-formingno94.255no
glucose-utilyes95.212no
aerobicno78.786yes
flagellatedno64.211no
thermophileno99.153no
motileyes92.389no
glucose-fermentyes90.513no

External links

@ref: 16697

culture collection no.: DSM 23080, LMG 2558, NCPPB 1682

straininfo link

  • @ref: 74503
  • straininfo: 3804

literature

  • topic: Phylogeny
  • Pubmed-ID: 19620357
  • title: Pantoea vagans sp. nov., Pantoea eucalypti sp. nov., Pantoea deleyi sp. nov. and Pantoea anthophila sp. nov.
  • authors: Brady CL, Venter SN, Cleenwerck I, Engelbeen K, Vancanneyt M, Swings J, Coutinho TA
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.009241-0
  • year: 2009
  • mesh: Amplified Fragment Length Polymorphism Analysis, Argentina, Bacterial Typing Techniques, Cluster Analysis, DNA Fingerprinting, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Eucalyptus/*microbiology, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Pantoea/*classification/genetics/*isolation & purification, Phylogeny, Plant Diseases/*microbiology, Plant Leaves/microbiology, Plant Shoots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, South Africa, Uganda, Uruguay, Zea mays/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
16697Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23080)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23080
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
29239Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604125659
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74503Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3804.1StrainInfo: A central database for resolving microbial strain identifiers